Gene detail

Detail information of GWHGAAZE004222

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009620036.1	2.287E-136	PREDICTED: 40S ribosomal protein S5 [Nicotiana tomentosiformis]
COG	YP_001013746.1	9E-64	30S ribosomal protein S7P
Swissprot	tr\|O65731\|RS5_CICAR	1E-127	40S ribosomal protein S5 (Fragment)
trEMBL	tr\|A0A068V172\|A0A068V172_COFCA	4E-136	Coffea canephora DH200=94 genomic scaffold, scaffold_81 {ECO:0000313\|EMBL:CDP14297.1}
TAIR10	AT2G37270.2	5E-99	ribosomal protein 5B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	113545074	113547482	+
GWHAAZE00000001	mRNA	113545074	113547482	+
GWHAAZE00000001	exon	113545074	113545157	+
GWHAAZE00000001	exon	113546168	113546439	+
GWHAAZE00000001	exon	113546860	113547063	+
GWHAAZE00000001	exon	113547180	113547482	+
GWHAAZE00000001	CDS	113545074	113545157	+
GWHAAZE00000001	CDS	113546168	113546439	+
GWHAAZE00000001	CDS	113546860	113547063	+
GWHAAZE00000001	CDS	113547180	113547234	+
GWHAAZE00000001	three_prime_UTR	113547235	113547482	+

Transcript Sequence
>GWHTAAZE004228 ATGGCGGCGGCTGCTGTAGATTCAGATAAGATTACTAAGACTGATGTTATGCTCTTCAACAGATGGTCATACGACGATGTTCAGATCAGTGATCTTTCTGTGGAGGATTACATTACTGCAACTTCTTCCAAGCACCCCACGTACATTCCCCACACGGCCGGGAGGTACCAAGCTAAGCGATTTAGGAAGGCGCAATGCCCAATTGTGGAGAGGCTGACTAACTCTCTCATGATGCACGGCCGTAACAATGGTAAAAAGTTGATGGCTGTTCGCATTGTTAAGCATGCTATGGAAATCATCCATTTGTTGACTGATGCAAATCCCATTCAAGTCATTGTTGATGCTGTTGTCAACAGCGGACCAAGAGAGGATGCAACTAGAATTGGTTCAGCAGGTGTGGTGAGGCGTCAGGCAGTTGATATTTCACCGCTTAGGCGTGTCAACCAGGCAATATATCTCTTAACAACTGGTGCCCGTGAGAGTGCTTTCAGGAACATTAAGACCATAGCCGAGTGCCTTGCTGACGAACTCATCAATGCCGCTAAGGGTTCTTCCAACAGTTATGCGATTAAAAAGAAAGATGAGATTGAGAGGGTTGCCAAGGCAAATCGTTGAGGGGCGGATGTTTGTTAGAGTAAGTTTTTGTATGAGTCCGTCTTTTTGTACTGGTATTTGCAAGTCATGAAGAAACAAGTAGCTGCTGTTTGCTATGGATGGAGGTTTTCTCTGTCTTTATCCTGTTTTTCTTCTTCGAAGAACTGCTTTTTTTTCTTGACTTATAAAAGTTGTGGGGATGATTTGATTAGTCATGTTCTATCATGAAAGGTTATTTTGAGCTTGTTATTGCCCAATTGTTTTCATAA

Network for GWHGAAZE004222

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00177.22	Ribosomal_S7	59	204	9.30E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02989	RP-S5e, RPS5	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0015935	cellular_component	small ribosomal subunit
GO:0003735	molecular_function	structural constituent of ribosome
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	85.471
	SRR3591706	second leaf	47.189
	SRR3591707	mature leaf	31.129
	SRR3591708	Shoot apex	110.290
	SRR3591709	Stem	56.382
	SRR3591710	White floral bud	47.651
	SRR3591711	White flower	71.598
	SRR3591712	Green floral bud	83.315
	SRR3591713	Yellow flower	60.309
SRP173429	SRR8316895	Juvenile bud stage	71.665
	SRR8316896	Juvenile bud stage	89.657
	SRR8316897	Juvenile bud stage	51.927
	SRR8316894	Third green stage	37.069
	SRR8316900	Third green stage	108.746
	SRR8316901	Third green stage	103.010
	SRR8316898	Complete white stage	29.286
	SRR8316899	Complete white stage	120.596
	SRR8316903	Complete white stage	40.659
	SRR8316902	Silver flowering stage	28.625
	SRR8316904	Silver flowering stage	40.641
	SRR8316905	Silver flowering stage	16.691
	SRR8316906	Gold flowering stage	54.411
	SRR8316907	Gold flowering stage	55.476
	SRR8316908	Gold flowering stage	67.241
SRP132670	SRR6706286	Control	101.542
	SRR6706287	Light intensity 50%	102.536
	SRR6706288	Light intensity 20%	111.676
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	118.156
	CNS0095593	Slightly white alabastrum(diploid) 2	135.645
	CNS0095594	Slightly white alabastrum(diploid) 3	115.728
	CNS0095595	Whole white alabastrum(diploid) 2	104.781
	CNS0095596	Whole white alabastrum(diploid) 3	112.983
	CNS0095597	Whole white alabastrum(diploid) 4	80.801
	CNS0095598	Silvery flower (diploied) 1	100.098
	CNS0095599	Silvery flower (diploied) 2	79.629
	CNS0095600	Silvery flower (diploied) 3	92.750
	CNS0095601	Golden flower (diploid) 1	83.781
	CNS0095602	Golden flower (diploid) 2	92.615
	CNS0095603	Golden flower (diploid) 3	96.723
	CNS0095604	Slightly white alabastrum(tetraploid) 1	125.969
	CNS0095605	Slightly white alabastrum(tetraploid) 2	126.292
	CNS0095606	Slightly white alabastrum(tetraploid) 3	166.227
	CNS0095607	Whole white alabastrum(tetraploid) 1	80.645
	CNS0095608	Whole white alabastrum(tetraploid) 2	65.602
	CNS0095609	Whole white alabastrum(tetraploid) 3	121.470
	CNS0095610	Silvery flower (tetraploid) 1	110.835
	CNS0095611	Silvery flower (tetraploid) 2	101.429
	CNS0095612	Silvery flower (tetraploid) 3	74.845
	CNS0095613	Golden flower (tetraploid) 1	85.930
	CNS0095614	Golden flower (tetraploid) 2	110.042
	CNS0095615	Golden flower (tetraploid) 3	66.309
CRA001975	CRR073297	Stem 1	105.253
	CRR073298	Stem 2	102.662
	CRR073299	Stem 3	124.260
	CRR073300	Leaf 1	106.185
	CRR073301	Leaf 2	119.117
	CRR073302	Leaf 3	144.975
	CRR073303	Juvenile bud 1	138.987
	CRR073304	Juvenile bud 2	93.354
	CRR073305	Juvenile bud 3	122.883
	CRR073306	Third green 1	27.648
	CRR073307	Third green 2	32.754
	CRR073308	Third green 3	35.414
	CRR073309	Second white 1	50.442
	CRR073310	Second white 2	36.106
	CRR073311	Second white 3	32.034
	CRR073312	Silver flowering 1	36.298
	CRR073313	Silver flowering 2	42.705
	CRR073314	Silver flowering 3	37.713
	CRR073315	Gold flowering 1	64.382
	CRR073316	Gold flowering 2	62.628
	CRR073317	Gold flowering 3	72.164
	CRR073318	Tawny withering 1	144.440
	CRR073319	Tawny withering 2	131.654
	CRR073320	Tawny withering 3	135.901