Gene detail

Detail information of GWHGAAZE004236

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002319165.1	1.7664E-144	short-chain dehydrogenase/reductase family protein [Populus trichocarpa]
COG	YP_004967393.1	1E-68	short-chain dehydrogenase/reductase SDR
Swissprot	tr\|Q08632\|SDR1_PICAB	4E-103	Short-chain type dehydrogenase/reductase
trEMBL	tr\|B9I5Y8\|B9I5Y8_POPTR	7E-145	Short-chain dehydrogenase/reductase family protein {ECO:0000313\|EMBL:EEE95088.1}
TAIR10	AT4G13180.1	5E-98	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	113724808	113725620	+
GWHAAZE00000001	mRNA	113724808	113725620	+
GWHAAZE00000001	exon	113724808	113725620	+
GWHAAZE00000001	CDS	113724808	113725620	+

Transcript Sequence
>GWHTAAZE004242 ATGGCAGGTGAAATTACCAATCTACCACTCTCGACCTCCACCTCCCTCCCACTTGATGGCAGAGTCGCTATAGTCACCGGCGGTTCACGTGGGATTGGCCGTGTGACTGCCCTCCACCTCCGGTCCCTCGGTGCAAAGCTCGTGATCAACTACACCTCCAACTCCAACCAAGCCGAAACCTTAGCATCGGAGCTTAACTCCGCATCCAATTCTCCCCATCCGGTGGCAATATCGGTCAAAGCAGACATCTCCAACCCCGACCAAGTCATCTCCCTCTTCGACCGAGCCGAGCAAGAATTCGGGTCCCACACCCATATCCTCGTGAACTGTGCTGGGGTACTAGACTCCAAGTACCCCACACTAGCCAATACAACAGTTGAAGACTGGGAAAATACATTTAGTGTGAACACTAGAGGTGCTTTCTTGTGCTGCCGAGAGGCTGCTAAGAGATTGACACGCGGTGGTGGTGGTAGGATTATTTTGGTAACTACATCGCTTGTTGGGGCTTCAATGCCCGGGTACGGTGCTTATACAGCCTCTAAGGCGGCTGTGGAGGCTATGGTGAAGATTGTGGCCAAGGAGCTGAAGGGGAGTGGGATAACTGCAAACTGTGTGGCACCGGGGCCAGTGGCGACTGAGCTTTTTTACGCAGGGAAAACAGAGGAGACTGTGAAGAGGATAGTGGATGCTTGTCCTTTGGGTCGAATTGGGGAGTCGCAAGATGTGGCAAATGTTGTTGGGTTTTTGGCTTCTGATACTGGGGAGTGGGTTAATGGTCAGATCATTCGGGTCAATGGTGGATTTGTTGTTTAA

Network for GWHGAAZE004236

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13561.7	adh_short_C2	29	268	6.20E-57

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00059	fabG, OAR1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid metabolism	map01212
		Fatty acid biosynthesis	map00061
		Biotin metabolism	map00780
		Prodigiosin biosynthesis	map00333

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.128
	SRR3591706	second leaf	2.548
	SRR3591707	mature leaf	7.398
	SRR3591708	Shoot apex	6.001
	SRR3591709	Stem	7.558
	SRR3591710	White floral bud	2.102
	SRR3591711	White flower	6.407
	SRR3591712	Green floral bud	2.396
	SRR3591713	Yellow flower	10.007
SRP173429	SRR8316895	Juvenile bud stage	2.381
	SRR8316896	Juvenile bud stage	2.867
	SRR8316897	Juvenile bud stage	2.868
	SRR8316894	Third green stage	0.722
	SRR8316900	Third green stage	1.424
	SRR8316901	Third green stage	2.490
	SRR8316898	Complete white stage	0.857
	SRR8316899	Complete white stage	1.216
	SRR8316903	Complete white stage	1.054
	SRR8316902	Silver flowering stage	13.991
	SRR8316904	Silver flowering stage	7.902
	SRR8316905	Silver flowering stage	7.151
	SRR8316906	Gold flowering stage	41.931
	SRR8316907	Gold flowering stage	26.579
	SRR8316908	Gold flowering stage	44.980
SRP132670	SRR6706286	Control	3.680
	SRR6706287	Light intensity 50%	3.022
	SRR6706288	Light intensity 20%	2.812
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.692
	CNS0095593	Slightly white alabastrum(diploid) 2	5.445
	CNS0095594	Slightly white alabastrum(diploid) 3	7.291
	CNS0095595	Whole white alabastrum(diploid) 2	2.663
	CNS0095596	Whole white alabastrum(diploid) 3	1.359
	CNS0095597	Whole white alabastrum(diploid) 4	3.315
	CNS0095598	Silvery flower (diploied) 1	3.974
	CNS0095599	Silvery flower (diploied) 2	1.975
	CNS0095600	Silvery flower (diploied) 3	1.930
	CNS0095601	Golden flower (diploid) 1	2.393
	CNS0095602	Golden flower (diploid) 2	3.345
	CNS0095603	Golden flower (diploid) 3	3.196
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.899
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.017
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.063
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.718
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.816
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.039
	CNS0095610	Silvery flower (tetraploid) 1	0.923
	CNS0095611	Silvery flower (tetraploid) 2	1.252
	CNS0095612	Silvery flower (tetraploid) 3	1.681
	CNS0095613	Golden flower (tetraploid) 1	1.417
	CNS0095614	Golden flower (tetraploid) 2	2.725
	CNS0095615	Golden flower (tetraploid) 3	0.369
CRA001975	CRR073297	Stem 1	3.688
	CRR073298	Stem 2	2.484
	CRR073299	Stem 3	2.026
	CRR073300	Leaf 1	2.238
	CRR073301	Leaf 2	3.767
	CRR073302	Leaf 3	1.684
	CRR073303	Juvenile bud 1	1.333
	CRR073304	Juvenile bud 2	0.526
	CRR073305	Juvenile bud 3	2.243
	CRR073306	Third green 1	1.041
	CRR073307	Third green 2	0.987
	CRR073308	Third green 3	0.763
	CRR073309	Second white 1	3.824
	CRR073310	Second white 2	4.360
	CRR073311	Second white 3	3.667
	CRR073312	Silver flowering 1	11.779
	CRR073313	Silver flowering 2	13.691
	CRR073314	Silver flowering 3	11.116
	CRR073315	Gold flowering 1	9.059
	CRR073316	Gold flowering 2	4.652
	CRR073317	Gold flowering 3	5.075
	CRR073318	Tawny withering 1	12.071
	CRR073319	Tawny withering 2	21.974
	CRR073320	Tawny withering 3	4.854