Detail information of GWHGAAZE004247


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAGC27311.17.695E-144NAC domain protein 8 [Gossypium hirsutum]
Swissprottr|Q9FLJ2|NC100_ARATH3E-101NAC domain-containing protein 100
trEMBLtr|U5IJP4|U5IJP4_GOSHI3E-144NAC domain protein 8 {ECO:0000313|EMBL:AGC27311.1}
TAIR10AT5G18270.17E-96Arabidopsis NAC domain containing protein 87

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene113922108113924302-
GWHAAZE00000001mRNA113922108113924302-
GWHAAZE00000001exon113922108113922689-
GWHAAZE00000001exon113923465113923745-
GWHAAZE00000001exon113924092113924302-
GWHAAZE00000001CDS113924092113924302-
GWHAAZE00000001CDS113923465113923745-
GWHAAZE00000001CDS113922108113922689-
Transcript Sequence

Network for GWHGAAZE004247

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02365.16NAM251502.80E-40
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyNAC

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0003677molecular_functionDNA binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE004247.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30102030405060708090100110120130Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.411
SRR3591706second leaf5.183
SRR3591707mature leaf2.365
SRR3591708Shoot apex7.218
SRR3591709Stem27.468
SRR3591710White floral bud21.405
SRR3591711White flower81.138
SRR3591712Green floral bud8.683
SRR3591713Yellow flower115.005
SRP173429 SRR8316895Juvenile bud stage 3.215
SRR8316896Juvenile bud stage 3.863
SRR8316897Juvenile bud stage 2.443
SRR8316894Third green stage 1.276
SRR8316900Third green stage 2.022
SRR8316901Third green stage 2.978
SRR8316898Complete white stage 1.874
SRR8316899Complete white stage 6.858
SRR8316903Complete white stage 2.730
SRR8316902Silver flowering stage9.550
SRR8316904Silver flowering stage10.360
SRR8316905Silver flowering stage5.489
SRR8316906Gold flowering stage 31.724
SRR8316907Gold flowering stage 23.487
SRR8316908Gold flowering stage 25.305
SRP132670SRR6706286Control4.433
SRR6706287Light intensity 50%4.231
SRR6706288Light intensity 20%2.980
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.347
CNS0095593Slightly white alabastrum(diploid) 25.705
CNS0095594Slightly white alabastrum(diploid) 310.179
CNS0095595Whole white alabastrum(diploid) 23.561
CNS0095596Whole white alabastrum(diploid) 31.072
CNS0095597Whole white alabastrum(diploid) 42.682
CNS0095598Silvery flower (diploied) 119.277
CNS0095599Silvery flower (diploied) 210.084
CNS0095600Silvery flower (diploied) 317.789
CNS0095601Golden flower (diploid) 111.080
CNS0095602Golden flower (diploid) 234.520
CNS0095603Golden flower (diploid) 329.850
CNS0095604Slightly white alabastrum(tetraploid) 11.567
CNS0095605Slightly white alabastrum(tetraploid) 21.103
CNS0095606Slightly white alabastrum(tetraploid) 35.197
CNS0095607Whole white alabastrum(tetraploid) 11.233
CNS0095608Whole white alabastrum(tetraploid) 21.486
CNS0095609Whole white alabastrum(tetraploid) 31.592
CNS0095610Silvery flower (tetraploid) 116.686
CNS0095611Silvery flower (tetraploid) 29.710
CNS0095612Silvery flower (tetraploid) 319.140
CNS0095613Golden flower (tetraploid) 131.410
CNS0095614Golden flower (tetraploid) 226.663
CNS0095615Golden flower (tetraploid) 342.075
CRA001975CRR073297Stem 11.886
CRR073298Stem 21.741
CRR073299Stem 31.599
CRR073300Leaf 12.149
CRR073301Leaf 24.095
CRR073302Leaf 30.929
CRR073303Juvenile bud 11.595
CRR073304Juvenile bud 23.190
CRR073305Juvenile bud 32.318
CRR073306Third green 14.953
CRR073307Third green 24.786
CRR073308Third green 35.422
CRR073309Second white 116.558
CRR073310Second white 227.402
CRR073311Second white 329.572
CRR073312Silver flowering 153.409
CRR073313Silver flowering 251.603
CRR073314Silver flowering 353.676
CRR073315Gold flowering 11.986
CRR073316Gold flowering 23.399
CRR073317Gold flowering 31.239
CRR073318Tawny withering 123.062
CRR073319Tawny withering 238.041
CRR073320Tawny withering 330.893