Gene detail

Detail information of GWHGAAZE004253

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002271188.2	0	PREDICTED: uncharacterized protein LOC100266793 [Vitis vinifera]
COG	YP_007099541.1	5E-19	uncharacterized protein containing a von Willebrand factor type A (vWA) domain
Swissprot	tr\|Q9ZU51\|RHA2B_ARATH	0.00001	Probable E3 ubiquitin-protein ligase RHA2B
trEMBL	tr\|A5B5Z1\|A5B5Z1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN69721.1}
TAIR10	AT3G54780.1	4E-144	Zinc finger (C3HC4-type RING finger) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	114027119	114032099	+
GWHAAZE00000001	mRNA	114027119	114032099	+
GWHAAZE00000001	exon	114027119	114027316	+
GWHAAZE00000001	exon	114030189	114032099	+
GWHAAZE00000001	CDS	114027119	114027316	+
GWHAAZE00000001	CDS	114030189	114032099	+

Transcript Sequence
>GWHTAAZE004259 ATGGCTGGTATGTGGAACAAACTAAAGAAATCTCTCTCATTCAACCCCTCATCGACTCCATCGGAATCTGCGCCTCCTCCTCAATTCGATATGTCGGCGGGGAAAGGTATTTCCGATTCCGATTCTCGATCGACGGTGTCGAGATCTTCGGCTTCACTGTCGATGTTCTCTAGAAGCTTCAGTGCTCGATCCTCCAAGAAAACATGCCCAATTTGCTTGGGACATTTGAAAACTGGGAAAGGCCAAGCCATCTTCACCGCTGAATGTTCCCACTCTTTTCACTTCAGCTGCATTGCCGACAGTGTTAAGCACGGAAATCACCTCTGCCCCATCTGCCGCTCCAAATGGAAAGACATTCCTCTGCAGTTCCCTACCAACAACCCCCCCAATCTTCAACCCCCCAATGGCCCAGGGCGAGCCCGGGTCTCCCCTTACCAAGTCCCCCCTGAAGATTACCCCACTAATGCCCCTCGTATAACCCCTCCACCAGAGCCCACAAACTACTCTGACGACGAGCCCCTCCCCACCACTGCTGCAACAGATCCAAGCTCACCCAAATCACTTTCCCTCACCCACTATGTCGCCCTCAAGGCCTTTACCGAGCGCCCTGCCATTACCTCGTTGGAATCCGTGGCTGCATTCGCAGTTCTTGTTGGCGTGCGTGCGCCTCCGCTCCTTGACCACGCGAGTCACTTAGCGCGTGCGCCCATTGACCTTGTCACGGTGCTAGACATTAGCGGCAGCATGTCGGGCTCAAAGCTCTCTCTCCTAAAGCGTGCAGTTCGATTTGTGATACAAAACTTGGGCCCATCCGACCGGCTTGCCATAGTCACTTTTTCATCGTCGGCTCGAAGAATCTTCCCATTGCGAAGGATGACTGACCAAGGCCGTGAAGATGCCACCTTGGCAGTTAACTCTCTTTCGTCAAATGGGGGCACTAACATTGTTGAGGGGCTTAAGAAAGGGGTCCGGGTCCTTGAAGAACGTTGTGAACGGAATCCAGTCGCAAGCATCATCCTCCTATCCGATGGAAAAGACACTTATAACCTCAACAACGCCCACCGACATCTGACTAACCAACAGCATGTATCGGGTTTTCTGAACCTGTTGCCGGTTACCATTTGCCCGAGCAACAGAGAAGCTAGAGATGATGAGGCTCCACCGCCAACCGTACCGGTCCACACGTTCGGGTTTGGCTCAGACCACGACTCCGCCTCCATGCATGCTATATCCGATGCATCGGGCGGCACCTTTTCCTTCATCGAGTCCGTCGGCATAGTTCAAGACGCATTTGCACGGTGCATCGGTGGTCTACTTAGCGTGGTGGCTCAGGAGCTTCGGCTCACTGTTAAAGCGGTCTCACCCGGGGTGATTATTGGATCCATACCCTCGGGAAAATACGCGAATAACATTTCTGAACAAGGACAAAAGGGTACTATAGAAGTGGGAGACTTGTACGCTGATGAAGAAAAAGAATTTCTCGTCTATGTCTCTGTTCCTGCTGAAAGAGCGGAAATTACATCACTGTTGGATGTAATGTGCTCGTATGTGAACACTGAATCAAAGGAGACGGTACAGGTTGAAGGCAAGAGGGTTATGATACGACGACCTGAGGTTCTGTCATTGACAGACATGAATGTTTCCCTGGAGGTTGATCGACAAAAGAACCGCCTGTTTGTGGCCGAAGGCATTGCGGAGGCACAACAGATGGCCGAGAGGGGGGACCTTGAGGGGGCTCAGGCGGTGCTGACGAGCAGGAGATTGGCCCTCCTAGCCTCGGCTTCAGCCCAAGCCGGGGACAACTTATGCGGCTGGCTCGAAGCCGAGCTGACCGAGATCAGAGAGAGGATGGCTAGCATGGAGATGTACGAGCACACGGGCCGAGCCTACGTGCTCTCGGGCTTGAGCTCGCACTCGTGGCAGAGGGCTACAACTAGGGGGGACTCGACCACTCAGACCACAGTGCTGACTGGGGATGGTGGGACCAGCAACACAGGTGTGATTGGCTATGATACGCCCACCATGGTTAGCATGGTCTCTAAGTCGCAGGTTCTCAACGTTGTCAATCCTCCTGAAAAAATTCTCGGCTCAGTAAGTCTTGCAGCTTGA

Network for GWHGAAZE004253

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	68	113	4.70E-09
PF00092.29	VWA	238	425	3.30E-23
PF14624.7	Vwaint	600	683	4.30E-20

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.684
	SRR3591706	second leaf	6.383
	SRR3591707	mature leaf	5.892
	SRR3591708	Shoot apex	11.319
	SRR3591709	Stem	23.508
	SRR3591710	White floral bud	193.441
	SRR3591711	White flower	224.710
	SRR3591712	Green floral bud	52.976
	SRR3591713	Yellow flower	121.889
SRP173429	SRR8316895	Juvenile bud stage	38.883
	SRR8316896	Juvenile bud stage	71.633
	SRR8316897	Juvenile bud stage	21.778
	SRR8316894	Third green stage	19.711
	SRR8316900	Third green stage	57.368
	SRR8316901	Third green stage	61.488
	SRR8316898	Complete white stage	91.725
	SRR8316899	Complete white stage	81.396
	SRR8316903	Complete white stage	162.395
	SRR8316902	Silver flowering stage	113.221
	SRR8316904	Silver flowering stage	140.055
	SRR8316905	Silver flowering stage	80.283
	SRR8316906	Gold flowering stage	207.801
	SRR8316907	Gold flowering stage	209.979
	SRR8316908	Gold flowering stage	262.592
SRP132670	SRR6706286	Control	105.021
	SRR6706287	Light intensity 50%	92.048
	SRR6706288	Light intensity 20%	79.116
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	33.229
	CNS0095593	Slightly white alabastrum(diploid) 2	21.645
	CNS0095594	Slightly white alabastrum(diploid) 3	42.024
	CNS0095595	Whole white alabastrum(diploid) 2	23.771
	CNS0095596	Whole white alabastrum(diploid) 3	25.707
	CNS0095597	Whole white alabastrum(diploid) 4	27.693
	CNS0095598	Silvery flower (diploied) 1	36.240
	CNS0095599	Silvery flower (diploied) 2	41.367
	CNS0095600	Silvery flower (diploied) 3	207.605
	CNS0095601	Golden flower (diploid) 1	35.407
	CNS0095602	Golden flower (diploid) 2	126.155
	CNS0095603	Golden flower (diploid) 3	119.361
	CNS0095604	Slightly white alabastrum(tetraploid) 1	32.580
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.710
	CNS0095606	Slightly white alabastrum(tetraploid) 3	45.364
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.352
	CNS0095608	Whole white alabastrum(tetraploid) 2	26.545
	CNS0095609	Whole white alabastrum(tetraploid) 3	71.755
	CNS0095610	Silvery flower (tetraploid) 1	241.855
	CNS0095611	Silvery flower (tetraploid) 2	283.197
	CNS0095612	Silvery flower (tetraploid) 3	259.494
	CNS0095613	Golden flower (tetraploid) 1	130.330
	CNS0095614	Golden flower (tetraploid) 2	187.453
	CNS0095615	Golden flower (tetraploid) 3	329.179
CRA001975	CRR073297	Stem 1	80.257
	CRR073298	Stem 2	70.000
	CRR073299	Stem 3	77.061
	CRR073300	Leaf 1	69.702
	CRR073301	Leaf 2	64.564
	CRR073302	Leaf 3	58.366
	CRR073303	Juvenile bud 1	64.778
	CRR073304	Juvenile bud 2	133.856
	CRR073305	Juvenile bud 3	84.700
	CRR073306	Third green 1	625.257
	CRR073307	Third green 2	408.912
	CRR073308	Third green 3	483.636
	CRR073309	Second white 1	556.170
	CRR073310	Second white 2	415.479
	CRR073311	Second white 3	421.921
	CRR073312	Silver flowering 1	666.582
	CRR073313	Silver flowering 2	941.788
	CRR073314	Silver flowering 3	760.333
	CRR073315	Gold flowering 1	14.592
	CRR073316	Gold flowering 2	16.193
	CRR073317	Gold flowering 3	19.088
	CRR073318	Tawny withering 1	17.766
	CRR073319	Tawny withering 2	11.426
	CRR073320	Tawny withering 3	23.054