Gene detail

Detail information of GWHGAAZE004258

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004293724.1	0	PREDICTED: transforming growth factor-beta receptor-associated protein 1-like [Fragaria vesca subsp. vesca]
trEMBL	tr\|E0CT98\|E0CT98_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI20547.3}
TAIR10	AT1G22860.1	1E-127	Vacuolar sorting protein 39

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	114085436	114089240	+
GWHAAZE00000001	mRNA	114085436	114089240	+
GWHAAZE00000001	exon	114085436	114086581	+
GWHAAZE00000001	exon	114087574	114087849	+
GWHAAZE00000001	exon	114089013	114089240	+
GWHAAZE00000001	CDS	114085436	114086581	+
GWHAAZE00000001	CDS	114087574	114087849	+
GWHAAZE00000001	CDS	114089013	114089240	+

Transcript Sequence
>GWHTAAZE004264 ATGGTTAAACCCGAAACGAAGATTCGCACTGTTCTCGAGCCATTCGCAGAGTTCAATCCCTCCGATTCTCCAGTCCCAGGCACTACAATTCGATCTCTCGCACTCTCCACTTTCTCCGATTCGGAAACCCTAATTTATGCCGGCACCGATTCCGGTGACCTCCTCTTACTCTCACTAAACCCTAACTTGCCTCAAAAGAGTTCTGAAAACGATAATTTGAAGTCTAAAACTGTCTTGTTTATTCGGTATGTTTACGTGAGCGATTGTGTTATTGATTCTGTACATGTAATCGTCAATTTTGGGAAGGTTGTATTGGTTTCGGATGGATTTTTGTATTTTGTTGACTCACTTTTACTTCAACCGGTGAAAAAGTTGAGTTCTTTGAGAGGAATTAGTGTTGTTGGTAGGAGATTTCGGAGCGGTGAATCAGAGGGTTCGAATTTGGTGGGGGGAGATGGTGGGGCTAGTTCTTCGGAGGTTCTGAGTACTAGTCAGCGTTTTTTGCAGAGATTAGGTGGTGGAATTAGGTCGAATGGTGTGAAGATTAAGGTGCCAGAATTAGATAGAGATGATAATTGTGTTTTTGCGGTGGTTGTTGGAAAGAAATTGATGTTGATTGGGCTTGCTTTGGGTGGTGGGGTTGGTAGAAGTGATCGGAATAATGATAGTACTGGTGGTTCTGTTGTGATCTTGAAAGAAATTCAATGTGTTGATGGGGTAAAAAGCATGGTGTGGCTAGATGATTCCATAATTGTTGGTACTTCCAGTGGGTACTACTTGTATTCATGTGTTAACGGGCAAAGTGCTTTGATATTTTCACTACCGGATCCATCGAGTTCGCCGCTGCTTAAATTGTTTTTGAAAGAGTATAAGGTACTTTTGCTGGTTGACAATGTGGGGATTACTGTGAACGCTCAAGGGCAACCAGTTGGTGGGAGCCTGGTATTTCATCAAGCACCAGAGTCGGTAGGAGAGATAACCAACTTTGTGCTTGTTATAAAGAAAGGGAAGATGGAGCTGTATCATAAGAAATCTGGTAACTGTATTCAAATGATTCCTTTTGCCGGAGAAGGAGCTGGTCCATTTGCCATGGCAGATGAGGAGAATGCGAGCGGGAAACTTATTGCTGTAGGAACACCTTCCAAGGTTATTTGCTATCGGAAAGTATCTCCTGAAGAACAAATAAAATACTTGTTGCGCAAAAAGAACTTTCAGGAAGCAGTATCCTTAGTTGAGGAATTTCAGAATGAAGGTGAAGTGACAAATGAAATGCTCTCATTTGTCCATGCTCAAGTGGGATTCCTTTTGCTGTTTGACTTACATTTTGAGGAAGCAGTAAATCACTTTCTGCTGTCAGAAACTATGCAACCTTCTGAAGTATTTCCATTCATCATGCGAGACCCAAATCGGTGGTCATTGCTGGTGCCAAGGAACAGGTATTGGGGCTTGCATCCTCCACCTGCACCCCTTGAAAATGTTATAGATGATGGGTTGATGGCTATCCAGAGAGCTATTTTTCTCAAGAAAGCAGGTGTAGAGTCTGCTTTAGACGATGAATTTCTTTTGAATCCTCCAAGTAGAGCGGATTTATTGGATTCTGCAATCAACAACATCATCAGGTGTTATGCCTCTCTTATGTTATTTAGCTGA

Network for GWHGAAZE004258

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00780.23	CNH	227	353	1.00E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K20177	VPS3, TGFBRAP1	Autophagy - yeast	map04138

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.226
	SRR3591706	second leaf	7.387
	SRR3591707	mature leaf	8.312
	SRR3591708	Shoot apex	8.778
	SRR3591709	Stem	9.430
	SRR3591710	White floral bud	11.969
	SRR3591711	White flower	17.155
	SRR3591712	Green floral bud	10.101
	SRR3591713	Yellow flower	11.765
SRP173429	SRR8316895	Juvenile bud stage	5.951
	SRR8316896	Juvenile bud stage	7.368
	SRR8316897	Juvenile bud stage	5.869
	SRR8316894	Third green stage	4.162
	SRR8316900	Third green stage	9.415
	SRR8316901	Third green stage	7.841
	SRR8316898	Complete white stage	4.804
	SRR8316899	Complete white stage	10.076
	SRR8316903	Complete white stage	9.169
	SRR8316902	Silver flowering stage	4.421
	SRR8316904	Silver flowering stage	11.025
	SRR8316905	Silver flowering stage	5.045
	SRR8316906	Gold flowering stage	14.851
	SRR8316907	Gold flowering stage	12.005
	SRR8316908	Gold flowering stage	16.210
SRP132670	SRR6706286	Control	11.914
	SRR6706287	Light intensity 50%	11.463
	SRR6706288	Light intensity 20%	12.385
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.084
	CNS0095593	Slightly white alabastrum(diploid) 2	2.885
	CNS0095594	Slightly white alabastrum(diploid) 3	1.844
	CNS0095595	Whole white alabastrum(diploid) 2	3.662
	CNS0095596	Whole white alabastrum(diploid) 3	2.416
	CNS0095597	Whole white alabastrum(diploid) 4	2.294
	CNS0095598	Silvery flower (diploied) 1	3.967
	CNS0095599	Silvery flower (diploied) 2	2.963
	CNS0095600	Silvery flower (diploied) 3	13.747
	CNS0095601	Golden flower (diploid) 1	4.216
	CNS0095602	Golden flower (diploid) 2	11.118
	CNS0095603	Golden flower (diploid) 3	12.609
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.686
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.861
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.228
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.513
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.196
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.692
	CNS0095610	Silvery flower (tetraploid) 1	14.117
	CNS0095611	Silvery flower (tetraploid) 2	14.572
	CNS0095612	Silvery flower (tetraploid) 3	12.160
	CNS0095613	Golden flower (tetraploid) 1	4.602
	CNS0095614	Golden flower (tetraploid) 2	10.930
	CNS0095615	Golden flower (tetraploid) 3	13.430
CRA001975	CRR073297	Stem 1	7.070
	CRR073298	Stem 2	7.254
	CRR073299	Stem 3	4.613
	CRR073300	Leaf 1	7.740
	CRR073301	Leaf 2	5.226
	CRR073302	Leaf 3	4.185
	CRR073303	Juvenile bud 1	5.781
	CRR073304	Juvenile bud 2	4.427
	CRR073305	Juvenile bud 3	6.341
	CRR073306	Third green 1	5.014
	CRR073307	Third green 2	3.334
	CRR073308	Third green 3	4.469
	CRR073309	Second white 1	4.821
	CRR073310	Second white 2	6.305
	CRR073311	Second white 3	9.258
	CRR073312	Silver flowering 1	8.125
	CRR073313	Silver flowering 2	9.125
	CRR073314	Silver flowering 3	7.549
	CRR073315	Gold flowering 1	1.247
	CRR073316	Gold flowering 2	5.412
	CRR073317	Gold flowering 3	3.914
	CRR073318	Tawny withering 1	3.184
	CRR073319	Tawny withering 2	3.574
	CRR073320	Tawny withering 3	3.925