Gene detail

Detail information of GWHGAAZE004259

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002270724.1	0	PREDICTED: transforming growth factor-beta receptor-associated protein 1 isoform X1 [Vitis vinifera]
trEMBL	tr\|E0CT98\|E0CT98_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI20547.3}
TAIR10	AT1G22860.1	4E-134	Vacuolar sorting protein 39

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	114102365	114109927	+
GWHAAZE00000001	mRNA	114102365	114109927	+
GWHAAZE00000001	exon	114102365	114102556	+
GWHAAZE00000001	exon	114103080	114103152	+
GWHAAZE00000001	exon	114103914	114103962	+
GWHAAZE00000001	exon	114104579	114104867	+
GWHAAZE00000001	exon	114105089	114105144	+
GWHAAZE00000001	exon	114105487	114105559	+
GWHAAZE00000001	exon	114105666	114105827	+
GWHAAZE00000001	exon	114106697	114106786	+
GWHAAZE00000001	exon	114108620	114108790	+
GWHAAZE00000001	exon	114109835	114109927	+
GWHAAZE00000001	CDS	114102365	114102556	+
GWHAAZE00000001	CDS	114103080	114103152	+
GWHAAZE00000001	CDS	114103914	114103962	+
GWHAAZE00000001	CDS	114104579	114104867	+
GWHAAZE00000001	CDS	114105089	114105144	+
GWHAAZE00000001	CDS	114105487	114105559	+
GWHAAZE00000001	CDS	114105666	114105827	+
GWHAAZE00000001	CDS	114106697	114106786	+
GWHAAZE00000001	CDS	114108620	114108790	+
GWHAAZE00000001	CDS	114109835	114109927	+

Transcript Sequence
>GWHTAAZE004265 ATGAGCTCCAAGGCTCTTTCTATATGGCGAACACTGGCCAGAAATTACTCATCTGGCTACTGGAAAGATTCTGCAGGGAATAATGATGATTCCACAAAAGTTATATCCGGGAAGGAGATTGCTGCAATTGAGGCTTCCAATATTCTTGAGGAGTCATCTGATCAAGATTTAATTTTGCAACATCTTGGATGGGTAGCAGATATCAACCAGGTACTTGCTGTACAAATTTTAACATCTGAGAAAAGAACTGAACAGCTGTCACCAGATGAAGTAATTGCTGCTATCGATCCAAAAAAAGTTGAGATCCTACAAAGATACCTCCAGTGGTTAATCGAAGATCAAGACTCTGATGACACTCAGTTCCATACATCATACGCACTCTTGCTTGCCAAATCGGCAATGGAAACTTATGAAGCAGAAAGTAGCTCTCAAAATTCAGAAGCTGGAACTGAAGGAGAAAAAAATAATGATGATTTTAAACCGCATTCTATCTTTCAGAGCCCTGTAAGGGACCGATTACAGATATTTTTACAGTCTTCAGATTTGTATGATCCAGAAGAGGTCCTTGACTTGATTGAAGGATCAGAATTATGGTTGGAAAAGGCTATACTTTACAGGAAGCTAGGGCAAGAAACATTGGTGCTCCAAATCTTGGCTTTGAAGCTGGAGGACAGTGATGCTGCTGAACAGTATTGTGCAGAAATTGGTCGACCCGATGCCTATATGCAGTTGGACAGTTTGAATTTACTTGCCTTATTTCTTGTGGTGGCTAATAACTGTAGGTTGCTTGAAATGTATTTGGATCCAAAAGATGGAAAGGAGCCCATGTTTAAAGCTGCAGTGCGCCTCCTCCACAACCATGGAGAATCTCTGGATCCTCTTCAAGTTCTAGAGAGATTGTCTCCTGATATGCCCATCCAACTCGCAGCAGATACAATATTAAGAATGTTAAGAGCTCGGCTTCATCATCATCATCAAGGACAGATTGTGCATAATTTATCTCATGCTATTGACATCGATGCAAGTTTGGCAAGATTGGAGGAAAGGTCAAGGCATGTTCAGATCAACGACGAGAGCCTCTGTGATTCTTGTCATGCTCGGCTTGGTACCAAGCTGTTTGCAATGTATCCGGACGATACAATAGTTTGTTACAAGTGTTTCAGGCGTCAGGGTGAGTCGACATCTGTCACTGGCCGCAACTTCAAGCAAGATATCATGTTCAAACCTGGTTGGCTTGTTACACGCTGA

Network for GWHGAAZE004259

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00637.21	Clathrin	86	245	1.90E-09
PF10367.10	Vps39_2	281	388	2.00E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K20177	VPS3, TGFBRAP1	Autophagy - yeast	map04138

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.187
	SRR3591706	second leaf	10.524
	SRR3591707	mature leaf	12.455
	SRR3591708	Shoot apex	15.258
	SRR3591709	Stem	14.036
	SRR3591710	White floral bud	16.301
	SRR3591711	White flower	17.923
	SRR3591712	Green floral bud	15.704
	SRR3591713	Yellow flower	16.129
SRP173429	SRR8316895	Juvenile bud stage	8.496
	SRR8316896	Juvenile bud stage	13.224
	SRR8316897	Juvenile bud stage	8.086
	SRR8316894	Third green stage	5.396
	SRR8316900	Third green stage	14.811
	SRR8316901	Third green stage	13.595
	SRR8316898	Complete white stage	4.974
	SRR8316899	Complete white stage	14.812
	SRR8316903	Complete white stage	9.589
	SRR8316902	Silver flowering stage	8.786
	SRR8316904	Silver flowering stage	12.025
	SRR8316905	Silver flowering stage	3.613
	SRR8316906	Gold flowering stage	16.014
	SRR8316907	Gold flowering stage	14.205
	SRR8316908	Gold flowering stage	15.991
SRP132670	SRR6706286	Control	7.446
	SRR6706287	Light intensity 50%	7.695
	SRR6706288	Light intensity 20%	8.192
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.203
	CNS0095593	Slightly white alabastrum(diploid) 2	10.979
	CNS0095594	Slightly white alabastrum(diploid) 3	10.829
	CNS0095595	Whole white alabastrum(diploid) 2	11.377
	CNS0095596	Whole white alabastrum(diploid) 3	8.676
	CNS0095597	Whole white alabastrum(diploid) 4	8.417
	CNS0095598	Silvery flower (diploied) 1	9.591
	CNS0095599	Silvery flower (diploied) 2	10.490
	CNS0095600	Silvery flower (diploied) 3	17.074
	CNS0095601	Golden flower (diploid) 1	9.263
	CNS0095602	Golden flower (diploid) 2	14.933
	CNS0095603	Golden flower (diploid) 3	15.372
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.331
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.425
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.392
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.285
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.298
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.093
	CNS0095610	Silvery flower (tetraploid) 1	16.222
	CNS0095611	Silvery flower (tetraploid) 2	16.604
	CNS0095612	Silvery flower (tetraploid) 3	16.664
	CNS0095613	Golden flower (tetraploid) 1	10.420
	CNS0095614	Golden flower (tetraploid) 2	14.714
	CNS0095615	Golden flower (tetraploid) 3	16.578
CRA001975	CRR073297	Stem 1	11.482
	CRR073298	Stem 2	10.182
	CRR073299	Stem 3	8.235
	CRR073300	Leaf 1	10.084
	CRR073301	Leaf 2	9.985
	CRR073302	Leaf 3	7.986
	CRR073303	Juvenile bud 1	10.335
	CRR073304	Juvenile bud 2	6.486
	CRR073305	Juvenile bud 3	10.868
	CRR073306	Third green 1	6.287
	CRR073307	Third green 2	5.601
	CRR073308	Third green 3	6.748
	CRR073309	Second white 1	8.903
	CRR073310	Second white 2	12.932
	CRR073311	Second white 3	10.504
	CRR073312	Silver flowering 1	12.033
	CRR073313	Silver flowering 2	11.201
	CRR073314	Silver flowering 3	9.903
	CRR073315	Gold flowering 1	7.548
	CRR073316	Gold flowering 2	9.634
	CRR073317	Gold flowering 3	5.321
	CRR073318	Tawny withering 1	10.810
	CRR073319	Tawny withering 2	11.276
	CRR073320	Tawny withering 3	9.928