Gene detail

Detail information of GWHGAAZE004260

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002270650.1	2.58156E-86	PREDICTED: LOB domain-containing protein 4 [Vitis vinifera]
Swissprot	tr\|Q9SHE9\|LBD4_ARATH	3E-69	LOB domain-containing protein 4
trEMBL	tr\|E0CTA1\|E0CTA1_VITVI	1E-86	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI20550.3}
TAIR10	AT1G31320.1	1E-53	LOB domain-containing protein 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	114110728	114112463	-
GWHAAZE00000001	mRNA	114110728	114112463	-
GWHAAZE00000001	exon	114112208	114112463	-
GWHAAZE00000001	exon	114110728	114111225	-
GWHAAZE00000001	five_prime_UTR	114112385	114112463	-
GWHAAZE00000001	CDS	114112208	114112384	-
GWHAAZE00000001	CDS	114110911	114111225	-
GWHAAZE00000001	three_prime_UTR	114110728	114110910	-

Transcript Sequence
>GWHTAAZE004266 CCTTGCATCTTTGTATTTAAGGGAAGTACCCTACAAGAAAAGGGTCATTTGTCCCTTAGATTAGAGACAATTGGAAGGCATGAAGGAGAGTGGTAGGAAACAAGGGGTACCCTCACCTTGTGCAGCTTGCAAGCTTTTGAGGAGGAGATGCGGGGTGGATTGTGTGTTTGCTCCTTATTTTCCGGCAGACGACCCTCAAAAGTTTGCCAATGTTCATAAGGTCTTTGGGGCTAGCAATGTCAACAAGATGTTACAGGAATTGCCAGAGCACCAACGAGGAGATGCAGTGAGCAGCATGGTTTATGAAGCGAATGCTCGGGTCCGAGACCCAGTGTATGGGTGTGTAGGGGCTATATCCTCCCTCCAACAACAAATTGACATGCTTCAGACCCAGTTGGCCATGGCTCAGGCCGAAGTGGTGCACCTGAGGCTGTTCCAGGCTCAAGCCATTAGCCCCACAAACAGTACTGGCTCACCCTCCTCAAGTGCCACCATTATGATGATGAGTTCACAAACCAAGCCCTTTTTTGACATGGATGTGATGGTGGACCAGGCCATGTGGTCATGCTAGGCTTTGCTATGACTCACTCATGCCTATTAGTTACAGTTTTTCCTTTTTTTGTTATATTTTTGTTTGTGGCTACAAAATATATATATGGGGTTGTAGTCTATTATGCTTTGAACCTCTTATTGCTAAATTTGCGACTTGACTAGCGGTTGGTAGTAGCAGTTAAGAAAGAACGGCTGATTTGAC

Network for GWHGAAZE004260

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03195.15	LOB	13	110	2.10E-43

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	LOB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.541
	SRR3591706	second leaf	8.812
	SRR3591707	mature leaf	20.508
	SRR3591708	Shoot apex	7.321
	SRR3591709	Stem	7.740
	SRR3591710	White floral bud	1.806
	SRR3591711	White flower	1.686
	SRR3591712	Green floral bud	4.556
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.785
	SRR8316896	Juvenile bud stage	0.625
	SRR8316897	Juvenile bud stage	0.626
	SRR8316894	Third green stage	0.601
	SRR8316900	Third green stage	5.325
	SRR8316901	Third green stage	3.512
	SRR8316898	Complete white stage	0.178
	SRR8316899	Complete white stage	4.774
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.222
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.266
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.119
SRP132670	SRR6706286	Control	5.234
	SRR6706287	Light intensity 50%	4.282
	SRR6706288	Light intensity 20%	4.272
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.318
	CNS0095593	Slightly white alabastrum(diploid) 2	6.070
	CNS0095594	Slightly white alabastrum(diploid) 3	1.982
	CNS0095595	Whole white alabastrum(diploid) 2	4.315
	CNS0095596	Whole white alabastrum(diploid) 3	5.809
	CNS0095597	Whole white alabastrum(diploid) 4	2.815
	CNS0095598	Silvery flower (diploied) 1	3.556
	CNS0095599	Silvery flower (diploied) 2	2.588
	CNS0095600	Silvery flower (diploied) 3	0.121
	CNS0095601	Golden flower (diploid) 1	0.821
	CNS0095602	Golden flower (diploid) 2	0.674
	CNS0095603	Golden flower (diploid) 3	0.622
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.715
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.428
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.547
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.153
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.336
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.406
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	1.413
	CNS0095612	Silvery flower (tetraploid) 3	0.182
	CNS0095613	Golden flower (tetraploid) 1	0.213
	CNS0095614	Golden flower (tetraploid) 2	0.430
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.148
	CRR073298	Stem 2	2.158
	CRR073299	Stem 3	5.733
	CRR073300	Leaf 1	4.910
	CRR073301	Leaf 2	4.085
	CRR073302	Leaf 3	5.479
	CRR073303	Juvenile bud 1	4.191
	CRR073304	Juvenile bud 2	1.025
	CRR073305	Juvenile bud 3	4.277
	CRR073306	Third green 1	0.094
	CRR073307	Third green 2	0.151
	CRR073308	Third green 3	0.208
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	3.187
	CRR073316	Gold flowering 2	4.002
	CRR073317	Gold flowering 3	10.622
	CRR073318	Tawny withering 1	9.758
	CRR073319	Tawny withering 2	5.794
	CRR073320	Tawny withering 3	10.506