Detail information of GWHGAAZE004285


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002276461.10PREDICTED: protein NAP1 [Vitis vinifera]
Swissprottr|Q5S2C4|NCKP1_ARATH0Protein NAP1
trEMBLtr|D7T9L3|D7T9L3_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI27184.3}
TAIR10AT2G35110.20transcription activators

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene114569762114592694+
GWHAAZE00000001mRNA114569762114592694+
GWHAAZE00000001exon114569762114570187+
GWHAAZE00000001exon114570283114570357+
GWHAAZE00000001exon114571735114571815+
GWHAAZE00000001exon114572166114572248+
GWHAAZE00000001exon114573048114573132+
GWHAAZE00000001exon114573732114573857+
GWHAAZE00000001exon114574027114574134+
GWHAAZE00000001exon114576790114576834+
GWHAAZE00000001exon114576914114577056+
GWHAAZE00000001exon114578654114578818+
GWHAAZE00000001exon114580137114580281+
GWHAAZE00000001exon114580418114580496+
GWHAAZE00000001exon114582840114583033+
GWHAAZE00000001exon114585121114585266+
GWHAAZE00000001exon114586965114587046+
GWHAAZE00000001exon114587120114587230+
GWHAAZE00000001exon114588426114588551+
GWHAAZE00000001exon114588793114588932+
GWHAAZE00000001exon114589032114589128+
GWHAAZE00000001exon114589499114590487+
GWHAAZE00000001exon114591225114591437+
GWHAAZE00000001exon114592208114592694+
GWHAAZE00000001CDS114569762114570187+
GWHAAZE00000001CDS114570283114570357+
GWHAAZE00000001CDS114571735114571815+
GWHAAZE00000001CDS114572166114572248+
GWHAAZE00000001CDS114573048114573132+
GWHAAZE00000001CDS114573732114573857+
GWHAAZE00000001CDS114574027114574134+
GWHAAZE00000001CDS114576790114576834+
GWHAAZE00000001CDS114576914114577056+
GWHAAZE00000001CDS114578654114578818+
GWHAAZE00000001CDS114580137114580281+
GWHAAZE00000001CDS114580418114580496+
GWHAAZE00000001CDS114582840114583033+
GWHAAZE00000001CDS114585121114585266+
GWHAAZE00000001CDS114586965114587046+
GWHAAZE00000001CDS114587120114587230+
GWHAAZE00000001CDS114588426114588551+
GWHAAZE00000001CDS114588793114588932+
GWHAAZE00000001CDS114589032114589128+
GWHAAZE00000001CDS114589499114590487+
GWHAAZE00000001CDS114591225114591437+
GWHAAZE00000001CDS114592208114592694+
Transcript Sequence

Network for GWHGAAZE004285

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF09735.10Nckap1791941.10E-14
PF09735.10Nckap11963842.70E-51
PF09735.10Nckap145712638.80E-236
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05750NCKAP1, NAP125 Regulation of actin cytoskeleton map04810

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf29.959
SRR3591706second leaf14.322
SRR3591707mature leaf10.992
SRR3591708Shoot apex21.081
SRR3591709Stem25.619
SRR3591710White floral bud10.956
SRR3591711White flower14.150
SRR3591712Green floral bud14.459
SRR3591713Yellow flower9.589
SRP173429 SRR8316895Juvenile bud stage 11.160
SRR8316896Juvenile bud stage 14.285
SRR8316897Juvenile bud stage 7.844
SRR8316894Third green stage 6.074
SRR8316900Third green stage 13.439
SRR8316901Third green stage 12.385
SRR8316898Complete white stage 2.629
SRR8316899Complete white stage 15.031
SRR8316903Complete white stage 6.493
SRR8316902Silver flowering stage3.278
SRR8316904Silver flowering stage5.180
SRR8316905Silver flowering stage2.234
SRR8316906Gold flowering stage 6.312
SRR8316907Gold flowering stage 7.101
SRR8316908Gold flowering stage 6.969
SRP132670SRR6706286Control11.899
SRR6706287Light intensity 50%12.864
SRR6706288Light intensity 20%13.552
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.410
CNS0095593Slightly white alabastrum(diploid) 210.545
CNS0095594Slightly white alabastrum(diploid) 310.093
CNS0095595Whole white alabastrum(diploid) 27.929
CNS0095596Whole white alabastrum(diploid) 37.342
CNS0095597Whole white alabastrum(diploid) 48.409
CNS0095598Silvery flower (diploied) 111.099
CNS0095599Silvery flower (diploied) 28.769
CNS0095600Silvery flower (diploied) 312.323
CNS0095601Golden flower (diploid) 19.001
CNS0095602Golden flower (diploid) 212.849
CNS0095603Golden flower (diploid) 312.973
CNS0095604Slightly white alabastrum(tetraploid) 110.823
CNS0095605Slightly white alabastrum(tetraploid) 29.290
CNS0095606Slightly white alabastrum(tetraploid) 324.458
CNS0095607Whole white alabastrum(tetraploid) 17.132
CNS0095608Whole white alabastrum(tetraploid) 24.889
CNS0095609Whole white alabastrum(tetraploid) 314.931
CNS0095610Silvery flower (tetraploid) 113.962
CNS0095611Silvery flower (tetraploid) 214.014
CNS0095612Silvery flower (tetraploid) 310.896
CNS0095613Golden flower (tetraploid) 16.441
CNS0095614Golden flower (tetraploid) 211.095
CNS0095615Golden flower (tetraploid) 37.471
CRA001975CRR073297Stem 119.899
CRR073298Stem 218.155
CRR073299Stem 313.758
CRR073300Leaf 117.801
CRR073301Leaf 216.462
CRR073302Leaf 310.360
CRR073303Juvenile bud 111.867
CRR073304Juvenile bud 27.326
CRR073305Juvenile bud 317.661
CRR073306Third green 12.738
CRR073307Third green 22.338
CRR073308Third green 33.590
CRR073309Second white 13.954
CRR073310Second white 24.935
CRR073311Second white 34.893
CRR073312Silver flowering 13.570
CRR073313Silver flowering 23.979
CRR073314Silver flowering 34.019
CRR073315Gold flowering 15.492
CRR073316Gold flowering 210.290
CRR073317Gold flowering 36.224
CRR073318Tawny withering 120.838
CRR073319Tawny withering 215.580
CRR073320Tawny withering 323.441