Detail information of GWHGAAZE004293


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrEYU35384.18.24205E-89hypothetical protein MIMGU_mgv1a012138mg [Erythranthe guttata]
COGYP_004689413.15E-1750S ribosomal protein L7/L12
Swissprottr|Q1XDE8|RK12_PYRYE2E-1750S ribosomal protein L12, chloroplastic {ECO:0000255|HAMAP-Rule:MF_00368}
trEMBLtr|A0A022R5W6|A0A022R5W6_ERYGU3E-89Uncharacterized protein {ECO:0000313|EMBL:EYU35384.1}
TAIR10AT1G70190.23E-54Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene114689525114690013-
GWHAAZE00000001mRNA114689525114690013-
GWHAAZE00000001exon114689525114690013-
GWHAAZE00000001CDS114689525114690013-
Transcript Sequence

Network for GWHGAAZE004293

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16320.6Ribosomal_L12_N32723.00E-06
PF00542.20Ribosomal_L12951611.30E-21
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02935RP-L7, MRPL12, rplL Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE004293.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3051015202530354045505560657075Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf26.150
SRR3591706second leaf20.468
SRR3591707mature leaf25.313
SRR3591708Shoot apex32.872
SRR3591709Stem29.192
SRR3591710White floral bud27.312
SRR3591711White flower47.036
SRR3591712Green floral bud58.532
SRR3591713Yellow flower32.832
SRP173429 SRR8316895Juvenile bud stage 32.783
SRR8316896Juvenile bud stage 39.840
SRR8316897Juvenile bud stage 14.182
SRR8316894Third green stage 19.381
SRR8316900Third green stage 58.883
SRR8316901Third green stage 54.860
SRR8316898Complete white stage 17.150
SRR8316899Complete white stage 67.832
SRR8316903Complete white stage 24.056
SRR8316902Silver flowering stage15.755
SRR8316904Silver flowering stage21.702
SRR8316905Silver flowering stage13.222
SRR8316906Gold flowering stage 35.193
SRR8316907Gold flowering stage 32.727
SRR8316908Gold flowering stage 32.608
SRP132670SRR6706286Control68.720
SRR6706287Light intensity 50%60.235
SRR6706288Light intensity 20%61.532
CNP0000432CNS0095592Slightly white alabastrum(diploid) 162.543
CNS0095593Slightly white alabastrum(diploid) 248.720
CNS0095594Slightly white alabastrum(diploid) 362.739
CNS0095595Whole white alabastrum(diploid) 234.687
CNS0095596Whole white alabastrum(diploid) 339.759
CNS0095597Whole white alabastrum(diploid) 427.557
CNS0095598Silvery flower (diploied) 134.270
CNS0095599Silvery flower (diploied) 230.923
CNS0095600Silvery flower (diploied) 340.063
CNS0095601Golden flower (diploid) 125.324
CNS0095602Golden flower (diploid) 230.202
CNS0095603Golden flower (diploid) 325.669
CNS0095604Slightly white alabastrum(tetraploid) 147.281
CNS0095605Slightly white alabastrum(tetraploid) 242.512
CNS0095606Slightly white alabastrum(tetraploid) 364.162
CNS0095607Whole white alabastrum(tetraploid) 126.112
CNS0095608Whole white alabastrum(tetraploid) 227.914
CNS0095609Whole white alabastrum(tetraploid) 355.476
CNS0095610Silvery flower (tetraploid) 138.795
CNS0095611Silvery flower (tetraploid) 233.390
CNS0095612Silvery flower (tetraploid) 322.410
CNS0095613Golden flower (tetraploid) 121.029
CNS0095614Golden flower (tetraploid) 232.705
CNS0095615Golden flower (tetraploid) 315.300
CRA001975CRR073297Stem 137.366
CRR073298Stem 252.458
CRR073299Stem 343.963
CRR073300Leaf 155.908
CRR073301Leaf 261.146
CRR073302Leaf 368.804
CRR073303Juvenile bud 159.135
CRR073304Juvenile bud 270.662
CRR073305Juvenile bud 365.354
CRR073306Third green 117.604
CRR073307Third green 221.582
CRR073308Third green 317.033
CRR073309Second white 124.085
CRR073310Second white 215.348
CRR073311Second white 314.461
CRR073312Silver flowering 112.343
CRR073313Silver flowering 213.277
CRR073314Silver flowering 311.495
CRR073315Gold flowering 120.668
CRR073316Gold flowering 222.904
CRR073317Gold flowering 322.889
CRR073318Tawny withering 135.770
CRR073319Tawny withering 254.622
CRR073320Tawny withering 331.385