Detail information of GWHGAAZE004301


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007041029.12.24181E-51RING/U-box superfamily protein [Theobroma cacao]
Swissprottr|Q9SG96|ATL72_ARATH1E-24RING-H2 finger protein ATL72
trEMBLtr|A0A061DVX2|A0A061DVX2_THECC8E-52RING/U-box superfamily protein {ECO:0000313|EMBL:EOX96860.1}
TAIR10AT3G10910.11E-20RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene114819413114819769-
GWHAAZE00000001mRNA114819413114819769-
GWHAAZE00000001exon114819413114819769-
GWHAAZE00000001CDS114819413114819769-
Transcript Sequence

Network for GWHGAAZE004301

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_253966.70E-15
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf28.956
SRR3591706second leaf3.003
SRR3591707mature leaf0.883
SRR3591708Shoot apex12.355
SRR3591709Stem17.138
SRR3591710White floral bud4.575
SRR3591711White flower1.170
SRR3591712Green floral bud9.123
SRR3591713Yellow flower0.091
SRP173429 SRR8316895Juvenile bud stage 2.585
SRR8316896Juvenile bud stage 1.122
SRR8316897Juvenile bud stage 0.922
SRR8316894Third green stage 0.034
SRR8316900Third green stage 1.502
SRR8316901Third green stage 0.324
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.995
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.186
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.192
SRR8316908Gold flowering stage 0.279
SRP132670SRR6706286Control0.517
SRR6706287Light intensity 50%0.432
SRR6706288Light intensity 20%1.077
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.611
CNS0095593Slightly white alabastrum(diploid) 20.396
CNS0095594Slightly white alabastrum(diploid) 31.507
CNS0095595Whole white alabastrum(diploid) 20.665
CNS0095596Whole white alabastrum(diploid) 30.194
CNS0095597Whole white alabastrum(diploid) 40.058
CNS0095598Silvery flower (diploied) 12.794
CNS0095599Silvery flower (diploied) 22.424
CNS0095600Silvery flower (diploied) 31.295
CNS0095601Golden flower (diploid) 13.869
CNS0095602Golden flower (diploid) 22.389
CNS0095603Golden flower (diploid) 31.932
CNS0095604Slightly white alabastrum(tetraploid) 10.189
CNS0095605Slightly white alabastrum(tetraploid) 20.212
CNS0095606Slightly white alabastrum(tetraploid) 32.281
CNS0095607Whole white alabastrum(tetraploid) 11.588
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.529
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 20.769
CNS0095612Silvery flower (tetraploid) 30.268
CNS0095613Golden flower (tetraploid) 10.144
CNS0095614Golden flower (tetraploid) 20.109
CNS0095615Golden flower (tetraploid) 30.176
CRA001975CRR073297Stem 12.974
CRR073298Stem 23.729
CRR073299Stem 36.140
CRR073300Leaf 13.451
CRR073301Leaf 22.311
CRR073302Leaf 32.185
CRR073303Juvenile bud 13.098
CRR073304Juvenile bud 20.244
CRR073305Juvenile bud 33.392
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 11.559
CRR073316Gold flowering 25.054
CRR073317Gold flowering 31.875
CRR073318Tawny withering 18.857
CRR073319Tawny withering 27.024
CRR073320Tawny withering 312.112