Gene detail

Detail information of GWHGAAZE004303

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011096836.1	0	PREDICTED: allantoate deiminase [Sesamum indicum]
COG	YP_003693635.1	6E-86	amidase
Swissprot	tr\|O49434\|AAH_ARATH	0	Allantoate deiminase (Precursor)
trEMBL	tr\|K4B7H0\|K4B7H0_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc02g068380.2.1}
TAIR10	AT4G20070.1	0	allantoate amidohydrolase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	114848391	114854452	+
GWHAAZE00000001	mRNA	114848391	114854452	+
GWHAAZE00000001	exon	114848391	114848621	+
GWHAAZE00000001	exon	114851091	114851194	+
GWHAAZE00000001	exon	114851272	114851353	+
GWHAAZE00000001	exon	114851462	114851578	+
GWHAAZE00000001	exon	114851863	114851972	+
GWHAAZE00000001	exon	114852053	114852158	+
GWHAAZE00000001	exon	114852254	114852340	+
GWHAAZE00000001	exon	114852748	114852975	+
GWHAAZE00000001	exon	114853109	114853234	+
GWHAAZE00000001	exon	114854083	114854244	+
GWHAAZE00000001	exon	114854330	114854452	+
GWHAAZE00000001	CDS	114848391	114848621	+
GWHAAZE00000001	CDS	114851091	114851194	+
GWHAAZE00000001	CDS	114851272	114851353	+
GWHAAZE00000001	CDS	114851462	114851578	+
GWHAAZE00000001	CDS	114851863	114851972	+
GWHAAZE00000001	CDS	114852053	114852158	+
GWHAAZE00000001	CDS	114852254	114852340	+
GWHAAZE00000001	CDS	114852748	114852975	+
GWHAAZE00000001	CDS	114853109	114853234	+
GWHAAZE00000001	CDS	114854083	114854244	+
GWHAAZE00000001	CDS	114854330	114854452	+

Transcript Sequence
>GWHTAAZE004309 ATGCGAGTGGCCTTCAAAAGCCAAAACAAAGGTGACATTTCAAAGCAAGAAGGCAAACACAGAGTTGAGTTGCGTGGCCTTGTTGATTGCTGGCAGCCATGGCTTCTCCCCATTTATCTTCTTCAAAAACACTTATCTTCTTCCTTCAAACACTACTCATCATTTCAATCTTATCTTTCATTCTCTTTGCTTCTCTATTCTCAGCCACTGCTTCTACAGACATCTGCTTCGATAAGTGATGCCAATGGTTATCTTGAAAGGACTTTCTTGAGCCCAGCTTCAGTCAGGGCTGCACATCTTATTCGATTATGGATGGAGGATGTTGGCCTTATAACGTGGGTGGACCAAATGGGCAACGTGCATGGTCGAACCAAAGGAACTGCAAGTGGAAAGGCTTTATTAATCGGTTCCCATTTGGATACTGTGATTGACGCGGGAATATTTGACGGTTCACTTGGTATAGTTTCTGCATTATCTGCTTTGAAGGTTTTAAATGTCACGGGGAGATTGGGAAAACTAAAGCGGCCTGTTGAGGTGATTGCATTTAGTGATGAAGAAGGCGTTAGGTTCCAATCTACCTTCTTGGGGAGCGCGGCTATTGCTGGTATATTACCAGTTTCAGCACTCCACATACACGATAAGAGTGGTGTGACAGTTCAAGGAGCGTTAAAGGAGAACTCCATTGAAACTGCAGAAGAAAACCTTTTGCAGCTCAAATATGATCCAGATTCTGTTTGGGGTTATATCGAGGTTCATATTGAACAGGGACCTGTTCTTGAATTAGCTGGCCTTCCTCTTGGTGTGGTGAAAGGAATTGCTGGACAGACTCGGCTAAAGGTAACCGTGAAAGGTTCACAAGGCCATGCTGGAACGGTTCCCATGTCAATGCGCCAGGATCCTATGGTTGGTGCTGCTGAATTAATTGTATTGATGGAAAGTCTTTGTAAAAATCCCAAGGATTTTCTATCTTATGACGACCAATGCGATGCGTCTACAGTCGAATCTCTTGCAGGATCACTTGTCTGCACTGTTGGAGAAATATCAAGTTGGCCAAGTGCAAGTAATGTAACCTTCACTGTAGATATGCGGGCAATGGATGACGTGGGCCGGGAAGCAATTATTTATGAACTGTCGAAAAAAATGTATGAAATCTGTGATCGGCGTTCTGTTTCTTGTGTCATCGAACGTAAGCACGATGCAAATGCAGCTGCTTGTGACAAGGAACTGAGTATGCAGCTGAAATCTGCAGCTTATGGAGCTCTAAAGAGAATGGCAGGCGAGGATATAGAAGATGTGCCTGTACTGATGAGTGGAGCAGGTCATGATGCAATGGCCATGTCTCATCTAACCAAGGTTGGGATGCTGTTTGTCCGTTGCCGAGGGGGAATTAGCCATTCCCCTGAAGAGCATGTATTAGATGATGATGTCTGGGCTGCTGGTTTGGCAATCCTATCATTTTTAGAGACTCATATGTAA

Network for GWHGAAZE004303

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01546.29	Peptidase_M20	134	480	1.50E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02083	allC	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Purine metabolism	map00230

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0016813	molecular_function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
GO:0008237	molecular_function	metallopeptidase activity
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.610
	SRR3591706	second leaf	15.425
	SRR3591707	mature leaf	31.722
	SRR3591708	Shoot apex	13.764
	SRR3591709	Stem	49.539
	SRR3591710	White floral bud	26.076
	SRR3591711	White flower	25.941
	SRR3591712	Green floral bud	35.879
	SRR3591713	Yellow flower	87.023
SRP173429	SRR8316895	Juvenile bud stage	13.864
	SRR8316896	Juvenile bud stage	26.981
	SRR8316897	Juvenile bud stage	15.430
	SRR8316894	Third green stage	12.043
	SRR8316900	Third green stage	33.232
	SRR8316901	Third green stage	33.758
	SRR8316898	Complete white stage	22.533
	SRR8316899	Complete white stage	58.528
	SRR8316903	Complete white stage	28.594
	SRR8316902	Silver flowering stage	14.878
	SRR8316904	Silver flowering stage	18.224
	SRR8316905	Silver flowering stage	9.742
	SRR8316906	Gold flowering stage	36.907
	SRR8316907	Gold flowering stage	33.398
	SRR8316908	Gold flowering stage	41.131
SRP132670	SRR6706286	Control	22.645
	SRR6706287	Light intensity 50%	24.880
	SRR6706288	Light intensity 20%	26.247
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.235
	CNS0095593	Slightly white alabastrum(diploid) 2	30.873
	CNS0095594	Slightly white alabastrum(diploid) 3	38.969
	CNS0095595	Whole white alabastrum(diploid) 2	31.068
	CNS0095596	Whole white alabastrum(diploid) 3	40.983
	CNS0095597	Whole white alabastrum(diploid) 4	33.273
	CNS0095598	Silvery flower (diploied) 1	22.335
	CNS0095599	Silvery flower (diploied) 2	24.146
	CNS0095600	Silvery flower (diploied) 3	41.315
	CNS0095601	Golden flower (diploid) 1	32.165
	CNS0095602	Golden flower (diploid) 2	68.716
	CNS0095603	Golden flower (diploid) 3	63.732
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.481
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.515
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.874
	CNS0095607	Whole white alabastrum(tetraploid) 1	33.765
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.640
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.880
	CNS0095610	Silvery flower (tetraploid) 1	41.785
	CNS0095611	Silvery flower (tetraploid) 2	35.338
	CNS0095612	Silvery flower (tetraploid) 3	18.526
	CNS0095613	Golden flower (tetraploid) 1	42.579
	CNS0095614	Golden flower (tetraploid) 2	44.584
	CNS0095615	Golden flower (tetraploid) 3	43.967
CRA001975	CRR073297	Stem 1	34.398
	CRR073298	Stem 2	33.909
	CRR073299	Stem 3	24.475
	CRR073300	Leaf 1	44.729
	CRR073301	Leaf 2	42.031
	CRR073302	Leaf 3	30.528
	CRR073303	Juvenile bud 1	36.000
	CRR073304	Juvenile bud 2	26.581
	CRR073305	Juvenile bud 3	48.309
	CRR073306	Third green 1	12.340
	CRR073307	Third green 2	20.964
	CRR073308	Third green 3	12.655
	CRR073309	Second white 1	15.236
	CRR073310	Second white 2	13.639
	CRR073311	Second white 3	9.115
	CRR073312	Silver flowering 1	16.290
	CRR073313	Silver flowering 2	22.801
	CRR073314	Silver flowering 3	21.333
	CRR073315	Gold flowering 1	35.929
	CRR073316	Gold flowering 2	45.143
	CRR073317	Gold flowering 3	31.890
	CRR073318	Tawny withering 1	24.320
	CRR073319	Tawny withering 2	18.694
	CRR073320	Tawny withering 3	15.199