Gene detail

Detail information of GWHGAAZE004328

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009629022.1	2.7661E-168	PREDICTED: dual specificity protein kinase splA-like [Nicotiana tomentosiformis]
COG	YP_001820979.1	2E-44	DNA-3-methyladenine glycosylase I
trEMBL	tr\|M1B2A5\|M1B2A5_SOLTU	9E-164	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400035460}
TAIR10	AT5G44680.1	3E-93	DNA glycosylase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	115202646	115205125	+
GWHAAZE00000001	mRNA	115202646	115205125	+
GWHAAZE00000001	exon	115202646	115203241	+
GWHAAZE00000001	exon	115203791	115203874	+
GWHAAZE00000001	exon	115204015	115204150	+
GWHAAZE00000001	exon	115204838	115205125	+
GWHAAZE00000001	CDS	115202646	115203241	+
GWHAAZE00000001	CDS	115203791	115203874	+
GWHAAZE00000001	CDS	115204015	115204150	+
GWHAAZE00000001	CDS	115204838	115205125	+

Transcript Sequence
>GWHTAAZE004334 ATGACTGCGACCGTTTCGCACATCAATGGCCGGCCGGTCCTCCAGCCAACTTGCAACCAAGTCCCTCTACTCGAAAGGCGAAACTCCGTCAAAAAAACACCCTCAAAGTCTCCGATTTCACCGTCACTTAAGCCCTTGGTGCAACCTAGGACTAGCCTAACCAGCACCCCACCAATTTCACCCAATCTGAAGTCACCGCGTCAGCCCGCAGTTAAGAGGAACGAGCCGAATAACAATGGGCTCAATTCAAGCGCTGAGAAGGTTGTTACTCCTAGGAACAGCGCCAAGTTAGTTGCGAAGAAGTCGAAGAAATGTGGCGGGGGAGTTGTGCCTTGTGCTGAGGCGAGTAGTACGTTGAAGTACTCTTCCTCGTCTATTGTTGAGGCGCCAGGGAGTATAGCCGCCGCGAGGAGGGAACACGTGGCGAATATGCAGGTGCAGAGGAAGATGAAGATTGCTCATTATGGGAGAACTAAATCTGGTAAATTTGAAGGCAAGGTTGATAATTTGGTTGATTCATCTGCTAATGTTAGAGAAGAGAAGAGATGCAGCTTTATTACTCCAAACTCAGGTACTAAACAGAAATTTTTTGTTATGCTGCTGTTTGAATTGCTAGCACTAACAGGGGCTCAAGTTGGATCAGATTGGACTTCAGTTTTAAGGAGAAGGCAAGAATTTAGGGATGCTTTCTCAGGATTTGATGCTGAAATTGTATCAAAGTTTTCTGAAAAGAAGATAAATTCAATCAGCTCTGATTATGGTATAGGTTTAAGCCAAGTACGAGGAATTGTCGACAACTCTAACCGAATTCTCGAGATCAAGAATAAATTTGGATCATTCAACAAATATTTGTGGGGATTTGTAAATCATAAGTCCATCTCCACCCAGTACAAGTCAACCCACAAGATGCCCGTGAAGACATCGAAATCTGAAGCCATAAGTAAAGATATGGTGAGGAGGGGGTTCAGACTAGTCGGCCCGACAGTCATACACTCTTTTATGCAAGCAGCTGGCCTTACCAACGATCACTTGACCACTTGTCCGCGGCACATCCAGTGTATCGCACTGGCGTCACAGCATGCCACTGTGGCGCCAGCCCTATAA

Network for GWHGAAZE004328

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03352.14	Adenine_glyco	201	349	1.50E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01246	tag	Base excision repair	map03410

Gene Ontology

GO term	Ontology	Name
GO:0006284	biological_process	base-excision repair
GO:0006281	biological_process	DNA repair
GO:0008725	molecular_function	DNA-3-methyladenine glycosylase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	146.874
	SRR3591706	second leaf	61.000
	SRR3591707	mature leaf	7.609
	SRR3591708	Shoot apex	74.146
	SRR3591709	Stem	21.017
	SRR3591710	White floral bud	135.694
	SRR3591711	White flower	34.973
	SRR3591712	Green floral bud	111.751
	SRR3591713	Yellow flower	6.908
SRP173429	SRR8316895	Juvenile bud stage	27.031
	SRR8316896	Juvenile bud stage	29.762
	SRR8316897	Juvenile bud stage	13.561
	SRR8316894	Third green stage	26.669
	SRR8316900	Third green stage	76.037
	SRR8316901	Third green stage	75.662
	SRR8316898	Complete white stage	51.861
	SRR8316899	Complete white stage	189.551
	SRR8316903	Complete white stage	94.072
	SRR8316902	Silver flowering stage	40.404
	SRR8316904	Silver flowering stage	81.174
	SRR8316905	Silver flowering stage	45.238
	SRR8316906	Gold flowering stage	98.414
	SRR8316907	Gold flowering stage	58.518
	SRR8316908	Gold flowering stage	60.683
SRP132670	SRR6706286	Control	132.668
	SRR6706287	Light intensity 50%	131.770
	SRR6706288	Light intensity 20%	139.973
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	40.682
	CNS0095593	Slightly white alabastrum(diploid) 2	40.116
	CNS0095594	Slightly white alabastrum(diploid) 3	27.904
	CNS0095595	Whole white alabastrum(diploid) 2	35.418
	CNS0095596	Whole white alabastrum(diploid) 3	36.493
	CNS0095597	Whole white alabastrum(diploid) 4	36.902
	CNS0095598	Silvery flower (diploied) 1	20.800
	CNS0095599	Silvery flower (diploied) 2	14.099
	CNS0095600	Silvery flower (diploied) 3	32.273
	CNS0095601	Golden flower (diploid) 1	12.170
	CNS0095602	Golden flower (diploid) 2	14.027
	CNS0095603	Golden flower (diploid) 3	13.671
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.071
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.713
	CNS0095606	Slightly white alabastrum(tetraploid) 3	75.213
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.287
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.514
	CNS0095609	Whole white alabastrum(tetraploid) 3	56.801
	CNS0095610	Silvery flower (tetraploid) 1	13.160
	CNS0095611	Silvery flower (tetraploid) 2	16.347
	CNS0095612	Silvery flower (tetraploid) 3	24.343
	CNS0095613	Golden flower (tetraploid) 1	1.231
	CNS0095614	Golden flower (tetraploid) 2	2.937
	CNS0095615	Golden flower (tetraploid) 3	18.421
CRA001975	CRR073297	Stem 1	88.407
	CRR073298	Stem 2	97.532
	CRR073299	Stem 3	110.830
	CRR073300	Leaf 1	160.198
	CRR073301	Leaf 2	133.553
	CRR073302	Leaf 3	133.102
	CRR073303	Juvenile bud 1	115.916
	CRR073304	Juvenile bud 2	101.735
	CRR073305	Juvenile bud 3	190.716
	CRR073306	Third green 1	103.241
	CRR073307	Third green 2	105.795
	CRR073308	Third green 3	94.555
	CRR073309	Second white 1	17.676
	CRR073310	Second white 2	11.138
	CRR073311	Second white 3	6.292
	CRR073312	Silver flowering 1	0.508
	CRR073313	Silver flowering 2	0.810
	CRR073314	Silver flowering 3	0.495
	CRR073315	Gold flowering 1	46.191
	CRR073316	Gold flowering 2	41.007
	CRR073317	Gold flowering 3	42.468
	CRR073318	Tawny withering 1	9.043
	CRR073319	Tawny withering 2	12.433
	CRR073320	Tawny withering 3	13.004