Gene detail

Detail information of GWHGAAZE004331

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP04108.1	0	unnamed protein product [Coffea canephora]
COG	YP_003649354.1	3E-124	replicative DNA helicase Mcm
Swissprot	tr\|Q6F353\|MCM6_ORYSJ	0	DNA replication licensing factor MCM6
trEMBL	tr\|A0A068U916\|A0A068U916_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_12 {ECO:0000313\|EMBL:CDP04108.1}
TAIR10	AT5G44635.1	0	minichromosome maintenance (MCM2/3/5) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	115254326	115262321	+
GWHAAZE00000001	mRNA	115254326	115262321	+
GWHAAZE00000001	exon	115254326	115254548	+
GWHAAZE00000001	exon	115254692	115254844	+
GWHAAZE00000001	exon	115255479	115255604	+
GWHAAZE00000001	exon	115255731	115255893	+
GWHAAZE00000001	exon	115256221	115256414	+
GWHAAZE00000001	exon	115256892	115257087	+
GWHAAZE00000001	exon	115257178	115257246	+
GWHAAZE00000001	exon	115257995	115258224	+
GWHAAZE00000001	exon	115258310	115258424	+
GWHAAZE00000001	exon	115258716	115258790	+
GWHAAZE00000001	exon	115258902	115259042	+
GWHAAZE00000001	exon	115259379	115259582	+
GWHAAZE00000001	exon	115259679	115259840	+
GWHAAZE00000001	exon	115260211	115260311	+
GWHAAZE00000001	exon	115260375	115260514	+
GWHAAZE00000001	exon	115260616	115260762	+
GWHAAZE00000001	exon	115261800	115261930	+
GWHAAZE00000001	exon	115262187	115262321	+
GWHAAZE00000001	five_prime_UTR	115254326	115254468	+
GWHAAZE00000001	CDS	115254469	115254548	+
GWHAAZE00000001	CDS	115254692	115254844	+
GWHAAZE00000001	CDS	115255479	115255604	+
GWHAAZE00000001	CDS	115255731	115255893	+
GWHAAZE00000001	CDS	115256221	115256414	+
GWHAAZE00000001	CDS	115256892	115257087	+
GWHAAZE00000001	CDS	115257178	115257246	+
GWHAAZE00000001	CDS	115257995	115258224	+
GWHAAZE00000001	CDS	115258310	115258424	+
GWHAAZE00000001	CDS	115258716	115258790	+
GWHAAZE00000001	CDS	115258902	115259042	+
GWHAAZE00000001	CDS	115259379	115259582	+
GWHAAZE00000001	CDS	115259679	115259840	+
GWHAAZE00000001	CDS	115260211	115260311	+
GWHAAZE00000001	CDS	115260375	115260514	+
GWHAAZE00000001	CDS	115260616	115260762	+
GWHAAZE00000001	CDS	115261800	115261930	+
GWHAAZE00000001	CDS	115262187	115262321	+

Transcript Sequence
>GWHTAAZE004337 TGGTGTCAATGCCTCTTTTCCCGCCAACTCTCGCTACTTCATTCATCGCTACCTCCGAAATTGAATTAGTTTATTACGATCGTATTAATTATCATCCTCTGTAGCAACTAAAACAACAAGAAGAAGAGAATTGAGACTCAAAAATGGACTCTTTCGGCGGCGGTTACTTCGTTGACGAGAAAGCAGTTCGTGTCGAAAACATCTTCTTAGAGTTTCTCAAGAGTTATAGATCGGAGTCGAATCCGCGAGAAATTTATTATGAATCAGAGATAGAAGCGATGAAACCAAACGAATCGAACACGATGTTTATTGATTTCTCTCACGTCATGAATTTCAATGATGTCCTCCAGAAAGCCATTTCTGATGAGTACTTGAGGTTCGAGCCGTTTCTGAAGAATGCTTGCAAGAGATTTGTGATGGAACAGAAGCCCACATTCATAACTGATGATAACCCCAACAAAGACATTAATGTGGCCTTCTACAATCTTCCCTTGTTAAAGAGATTGAGGGAGTTGAGTACAGCCGAAATAGGGAAACTAGTATCAGTGACTGGAGTTGTGACTCGTACCAGTGAAGTTAGGCCAGAACTTCTTCAAGGCACTTTCAAGTGCTTGGAATGTGGAACTGTTGTTAAGAATGTTGAACAACAATTTAAGTACACAGAGCCCATAATATGCATGAATGCAATGTGTGCAAAGAGAACAAAATGGGCACTGCTTCGACAAGATAGCAAATTTGCAGATTGGCAGAGGGTCAGGATGCAAGAAACCTCCAAAGAGATACCTGCAGGCTCCCTTCCCAGATCATTGGATGTCATCCTCCGCCATGATATTGTTGAACAAGCCAAGGCTGGTGACACGGTCATATTTACTGGCAGTGTGGTGGTGATACCGGATATACTGGCACTGGCCTCCCCAGGGGAGAGAGCTGAGTGCCATCGAGAAGCTTCTCAGCGTAAGAATCCTGCTGGTGGGCAAGAAGGTGTCAGGGGTCTACGTGCCTTAGGAGTTAGAGACCTCTCCTACCGCCTGGCCTTTATTGCCAGTTCAGTACAGATATGTGATGGGAGAAGGGTGTCTGATATCAGAAATGGAAAGAGCGACGATGATGATAATAACTTCACGGAACAGGAGAAAAAAGATGCCAGCAAGATGAAAGAAACCCCTGATTTTTTCAAAAAGCTTGTGGACAGCATTGCCCCAACGATTTATGGCCACCAAGAAATAAAGAGAGCAATCCTACTTATGCTTTTGGGTGGTGTCCATAAGTTCACTCATGAAGGCATCAACCTGAGGGGGGACATTAACGTTTGCATCGTCGGTGATCCAAGTTGTGCAAAGTCTCAATTCCTCAAATACACTGCAGATCTGGTTCCAAGATCTGTCTATACATCTGGAAAATCTTCCTCAGCAGCTGGCTTGACTGCAACGGTGGCTAAAGAGCCAGAAACTGGGGAGTTCTGTATTGAGGCTGGTGCACTAATGCTTGCTGACAACGGGATCTGTTGCATTGATGAATTTGACAAGATGGACATAAGAGATCAGGTTGCGATTCATGAAGCAATGGAACAGCAGACAATAAGCATAACTAAAGCAGGAATACAAGCAACACTAAACGCGCGGACTTCAATTTTGGCCGCAGCTAACCCTGCTGGGGGTCGTTATGATAAATCCAAACCACTAAAGTATAATGTGGCTCTTCCTCCTGCTATCCTTTCGAGGTTTGATCTAGTATATGTAATGATTGATGACCCAGATGATCAAACAGATTACCACATTGCTCACCACATTGTGAGGGTCCATCAAAAGCGTGAAGAAGCAATTTCTCCAGCATTTACTACTTCTGAGTTGCAGAGTTATCTTAAATATGCAAAGACTCTTAAACCAAAGCTAACTGAAGAAGCTAGACAATTATTGGTGGACTCTTATGTTACTCTACGTAGAGGTGATGCAACTCCTGGCAGTAGAGTTGCGTATCGCATGACAGTTAGGCAGCTTGAGGCATTGATCAGGCTTTCCGAGGCTATTGCTCGTAGTCATTTGGATACTCAGGTGCACCCACGCCATGTAAAGCTTGCTGTGAGACTGCTGAAAACATCCATAATCAGGCAAGGAACAATTATATTGCTTTTGATGGCTAAATTTCAATTTTCTGTGGAGTCAAGTGAAATTGATCTGTCCGAGTTTCAAGAAGAGATTCGCGATGATGGTGATAATGGAGATGGTGGTTCTGACCGAGGTGAAGCTCAGCCAGGTGGTGCTGAAGCTAATGAGCCAGTTTCTGGCAATACAGAAAATGGAGCAGAGGCAGAAAATGGAGCAGAGGCAGGAAACCGGCAAGGGAAGAAGAAACTTGTAATAACTGATGAATATTTTCAGCGCGTAACCCAAGCCCTTGCCATGCGTCTTAGACAGCACGAGGAAACTGTAATGCAAGAAGGGACAGGGCTAGCTGGAATGAGACAGAGGGAATTGATAAAGTGGTATGTTGAGCAGCAGAATGAGAAGAACAACTACAGTTCAGAGGAGGAGGCAAGAGCTGAAGTTACTAAACTCAAAGCTATTATAGAGAGTTTGATACGAAGGGAAGGTGTTTTGATAGTTGTGGACGATGGTACGCAAGCAGCGGAAGAGGGTGAGAATGCCAGGCCTTCTTCTAGAAATGACAGGATTTTAGCCGTGGCACCTAATTATGTCATAGATTAA

Network for GWHGAAZE004331

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14551.7	MCM_N	20	114	1.50E-14
PF17207.4	MCM_OB	121	249	8.50E-38
PF00493.24	MCM	332	553	5.50E-102
PF17855.2	MCM_lid	568	653	3.20E-24
PF18263.2	MCM6_C	735	852	5.30E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02542	MCM6	DNA replication	map03030
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113

Gene Ontology

GO term	Ontology	Name
GO:0006260	biological_process	DNA replication
GO:0006270	biological_process	DNA replication initiation
GO:0005634	cellular_component	nucleus
GO:0042555	cellular_component	MCM complex
GO:0003677	molecular_function	DNA binding
GO:0005524	molecular_function	ATP binding
GO:0003678	molecular_function	DNA helicase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.428
	SRR3591706	second leaf	7.753
	SRR3591707	mature leaf	9.312
	SRR3591708	Shoot apex	29.776
	SRR3591709	Stem	4.241
	SRR3591710	White floral bud	2.217
	SRR3591711	White flower	1.988
	SRR3591712	Green floral bud	2.581
	SRR3591713	Yellow flower	1.223
SRP173429	SRR8316895	Juvenile bud stage	6.059
	SRR8316896	Juvenile bud stage	5.046
	SRR8316897	Juvenile bud stage	3.212
	SRR8316894	Third green stage	1.296
	SRR8316900	Third green stage	3.099
	SRR8316901	Third green stage	1.982
	SRR8316898	Complete white stage	0.339
	SRR8316899	Complete white stage	2.030
	SRR8316903	Complete white stage	0.617
	SRR8316902	Silver flowering stage	0.518
	SRR8316904	Silver flowering stage	0.543
	SRR8316905	Silver flowering stage	0.211
	SRR8316906	Gold flowering stage	0.687
	SRR8316907	Gold flowering stage	0.976
	SRR8316908	Gold flowering stage	0.644
SRP132670	SRR6706286	Control	3.666
	SRR6706287	Light intensity 50%	4.523
	SRR6706288	Light intensity 20%	5.302
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.897
	CNS0095593	Slightly white alabastrum(diploid) 2	3.950
	CNS0095594	Slightly white alabastrum(diploid) 3	2.354
	CNS0095595	Whole white alabastrum(diploid) 2	1.902
	CNS0095596	Whole white alabastrum(diploid) 3	1.105
	CNS0095597	Whole white alabastrum(diploid) 4	1.720
	CNS0095598	Silvery flower (diploied) 1	4.854
	CNS0095599	Silvery flower (diploied) 2	7.573
	CNS0095600	Silvery flower (diploied) 3	2.564
	CNS0095601	Golden flower (diploid) 1	3.080
	CNS0095602	Golden flower (diploid) 2	2.615
	CNS0095603	Golden flower (diploid) 3	2.464
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.918
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.436
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.600
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.967
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.285
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.835
	CNS0095610	Silvery flower (tetraploid) 1	3.286
	CNS0095611	Silvery flower (tetraploid) 2	3.011
	CNS0095612	Silvery flower (tetraploid) 3	0.666
	CNS0095613	Golden flower (tetraploid) 1	2.808
	CNS0095614	Golden flower (tetraploid) 2	2.670
	CNS0095615	Golden flower (tetraploid) 3	2.105
CRA001975	CRR073297	Stem 1	10.107
	CRR073298	Stem 2	8.282
	CRR073299	Stem 3	12.110
	CRR073300	Leaf 1	2.570
	CRR073301	Leaf 2	2.486
	CRR073302	Leaf 3	1.509
	CRR073303	Juvenile bud 1	1.716
	CRR073304	Juvenile bud 2	1.021
	CRR073305	Juvenile bud 3	1.858
	CRR073306	Third green 1	0.495
	CRR073307	Third green 2	0.303
	CRR073308	Third green 3	0.636
	CRR073309	Second white 1	0.056
	CRR073310	Second white 2	0.037
	CRR073311	Second white 3	0.020
	CRR073312	Silver flowering 1	0.028
	CRR073313	Silver flowering 2	0.334
	CRR073314	Silver flowering 3	0.151
	CRR073315	Gold flowering 1	2.191
	CRR073316	Gold flowering 2	2.829
	CRR073317	Gold flowering 3	0.713
	CRR073318	Tawny withering 1	8.822
	CRR073319	Tawny withering 2	6.961
	CRR073320	Tawny withering 3	11.728