Gene detail

Detail information of GWHGAAZE004334

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009594063.1	1.4063E-94	PREDICTED: transcription initiation factor TFIID subunit 11 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9M565\|TAF11_ARATH	2E-64	Transcription initiation factor TFIID subunit 11
trEMBL	tr\|K4BZ67\|K4BZ67_SOLLC	4E-94	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc05g018120.1.1}
TAIR10	AT4G20280.1	1E-51	TBP-associated factor 11

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	115320636	115324087	+
GWHAAZE00000001	mRNA	115320636	115324087	+
GWHAAZE00000001	exon	115320636	115320955	+
GWHAAZE00000001	exon	115321830	115321917	+
GWHAAZE00000001	exon	115322741	115322840	+
GWHAAZE00000001	exon	115323671	115324087	+
GWHAAZE00000001	CDS	115320636	115320955	+
GWHAAZE00000001	CDS	115321830	115321917	+
GWHAAZE00000001	CDS	115322741	115322840	+
GWHAAZE00000001	CDS	115323671	115323798	+
GWHAAZE00000001	three_prime_UTR	115323799	115324087	+

Transcript Sequence
>GWHTAAZE004340 ATGAAGCAATCCAAGGATCCTTTCGAAGTTGCATTTGAGGAACAAGATGAATCTCCACCTGATTCTCCCATTGCCCAAGAGGATACTGAAACTCAAACTGCAGCTGCCCAAGTTGCTCTTAATAATGAAGGAGATGCTGATGTCAATACCAATACTGGTACTATAAACCCTTCAACATCCACAGGTGCTCAAATCTCAAGGGCCGCTGTCCCAACCAACAAGAACAAGGAAGAAGATGACGAAGAAGAGGAAGAGAACATGGATGTGGAGCTTGGAAAGTTCTCATCTACTGGTGACCCTGAAAAAAGGGCCACAATGCAGGCTATTTTATCACAATTTACTGAGGAGCAAATGAGTAGGTATGAATCATACCGAAGATCCGGATTTCAGAAAGCTAACATGAAAAGGTTGTTAGCGAGTATCACTGGAAGTGCAAAAATTTCCGTGCCTATGACAATTGTGGTGTCCGGCATAGCAAAAATTTTCGTTGGCGAGCTTGTTGAAACAGCAAGAATGGTTATGACGGAGAGGAAAGAGAGTGGACCAATCAGACCTTGCCACATCAGAGAAGCGTACAGAAGACTAAAACTTGAAGGGAAGGTGCCGAAAAGATCCGTTCCTAGACTCTTCCGATAGATTGACCTCGAGCCGAGCCTAGACTAGCCTAGCTTCACTTCATCTCCGGATTTTCTTCGGGTTCTCAACAGTCTTCTTGGTCCCAATACTTGTACATTTTAAACATGTATTCAGTATTCTGCCCTTTGGAGATGCGCATTTAGTGGTGTATAGTTTCTACCAGGTAGAATACTGCTAACAAAGAAATTAGAAAATGGGAATATCAATTCTAAGACAGATTGAGAACTTCATACATGAATTACTAAATTTTGTTATTGGAAAAATAAACAATGGGGCACTTTGAGATTTA

Network for GWHGAAZE004334

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04719.15	TAFII28	109	194	1.50E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03135	TAF11	Basal transcription factors	map03022

Gene Ontology

GO term	Ontology	Name
GO:0006367	biological_process	transcription initiation from RNA polymerase II promoter
GO:0005634	cellular_component	nucleus
GO:0046982	molecular_function	protein heterodimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.182
	SRR3591706	second leaf	10.726
	SRR3591707	mature leaf	13.266
	SRR3591708	Shoot apex	21.481
	SRR3591709	Stem	22.231
	SRR3591710	White floral bud	13.849
	SRR3591711	White flower	16.984
	SRR3591712	Green floral bud	14.482
	SRR3591713	Yellow flower	16.188
SRP173429	SRR8316895	Juvenile bud stage	11.906
	SRR8316896	Juvenile bud stage	15.675
	SRR8316897	Juvenile bud stage	10.832
	SRR8316894	Third green stage	6.610
	SRR8316900	Third green stage	18.832
	SRR8316901	Third green stage	21.079
	SRR8316898	Complete white stage	6.209
	SRR8316899	Complete white stage	13.437
	SRR8316903	Complete white stage	8.652
	SRR8316902	Silver flowering stage	7.730
	SRR8316904	Silver flowering stage	10.557
	SRR8316905	Silver flowering stage	4.582
	SRR8316906	Gold flowering stage	12.536
	SRR8316907	Gold flowering stage	12.308
	SRR8316908	Gold flowering stage	15.766
SRP132670	SRR6706286	Control	12.329
	SRR6706287	Light intensity 50%	15.163
	SRR6706288	Light intensity 20%	14.334
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.698
	CNS0095593	Slightly white alabastrum(diploid) 2	16.757
	CNS0095594	Slightly white alabastrum(diploid) 3	24.320
	CNS0095595	Whole white alabastrum(diploid) 2	19.366
	CNS0095596	Whole white alabastrum(diploid) 3	20.850
	CNS0095597	Whole white alabastrum(diploid) 4	22.299
	CNS0095598	Silvery flower (diploied) 1	12.607
	CNS0095599	Silvery flower (diploied) 2	10.626
	CNS0095600	Silvery flower (diploied) 3	13.478
	CNS0095601	Golden flower (diploid) 1	7.971
	CNS0095602	Golden flower (diploid) 2	9.842
	CNS0095603	Golden flower (diploid) 3	10.018
	CNS0095604	Slightly white alabastrum(tetraploid) 1	47.509
	CNS0095605	Slightly white alabastrum(tetraploid) 2	51.704
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.775
	CNS0095607	Whole white alabastrum(tetraploid) 1	51.046
	CNS0095608	Whole white alabastrum(tetraploid) 2	43.933
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.440
	CNS0095610	Silvery flower (tetraploid) 1	26.593
	CNS0095611	Silvery flower (tetraploid) 2	21.677
	CNS0095612	Silvery flower (tetraploid) 3	23.390
	CNS0095613	Golden flower (tetraploid) 1	23.020
	CNS0095614	Golden flower (tetraploid) 2	19.316
	CNS0095615	Golden flower (tetraploid) 3	17.188
CRA001975	CRR073297	Stem 1	20.630
	CRR073298	Stem 2	15.646
	CRR073299	Stem 3	13.357
	CRR073300	Leaf 1	19.578
	CRR073301	Leaf 2	20.271
	CRR073302	Leaf 3	13.709
	CRR073303	Juvenile bud 1	17.570
	CRR073304	Juvenile bud 2	7.224
	CRR073305	Juvenile bud 3	10.948
	CRR073306	Third green 1	10.442
	CRR073307	Third green 2	7.893
	CRR073308	Third green 3	9.307
	CRR073309	Second white 1	9.763
	CRR073310	Second white 2	9.891
	CRR073311	Second white 3	10.859
	CRR073312	Silver flowering 1	8.944
	CRR073313	Silver flowering 2	6.276
	CRR073314	Silver flowering 3	7.935
	CRR073315	Gold flowering 1	10.827
	CRR073316	Gold flowering 2	11.580
	CRR073317	Gold flowering 3	6.183
	CRR073318	Tawny withering 1	12.204
	CRR073319	Tawny withering 2	15.754
	CRR073320	Tawny withering 3	16.204