Gene detail

Detail information of GWHGAAZE004336

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011096876.1	0	PREDICTED: CTP synthase-like isoform X2 [Sesamum indicum]
COG	YP_003483162.1	8E-162	CTP synthase
trEMBL	tr\|K4BA89\|K4BA89_SOLLC	0	CTP synthase {ECO:0000256\|RuleBase:RU810713}
TAIR10	AT1G30820.1	0	CTP synthase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	115397023	115402962	+
GWHAAZE00000001	mRNA	115397023	115402962	+
GWHAAZE00000001	exon	115397023	115397097	+
GWHAAZE00000001	exon	115398011	115398160	+
GWHAAZE00000001	exon	115398767	115398877	+
GWHAAZE00000001	exon	115398967	115399135	+
GWHAAZE00000001	exon	115399342	115399398	+
GWHAAZE00000001	exon	115399507	115399571	+
GWHAAZE00000001	exon	115399828	115399878	+
GWHAAZE00000001	exon	115399995	115400057	+
GWHAAZE00000001	exon	115400148	115400194	+
GWHAAZE00000001	exon	115400284	115400353	+
GWHAAZE00000001	exon	115400451	115400513	+
GWHAAZE00000001	exon	115401525	115401614	+
GWHAAZE00000001	exon	115401693	115401731	+
GWHAAZE00000001	exon	115401831	115402058	+
GWHAAZE00000001	exon	115402143	115402202	+
GWHAAZE00000001	exon	115402496	115402576	+
GWHAAZE00000001	exon	115402686	115402779	+
GWHAAZE00000001	exon	115402871	115402962	+
GWHAAZE00000001	CDS	115397023	115397097	+
GWHAAZE00000001	CDS	115398011	115398160	+
GWHAAZE00000001	CDS	115398767	115398877	+
GWHAAZE00000001	CDS	115398967	115399135	+
GWHAAZE00000001	CDS	115399342	115399398	+
GWHAAZE00000001	CDS	115399507	115399571	+
GWHAAZE00000001	CDS	115399828	115399878	+
GWHAAZE00000001	CDS	115399995	115400057	+
GWHAAZE00000001	CDS	115400148	115400194	+
GWHAAZE00000001	CDS	115400284	115400353	+
GWHAAZE00000001	CDS	115400451	115400513	+
GWHAAZE00000001	CDS	115401525	115401614	+
GWHAAZE00000001	CDS	115401693	115401731	+
GWHAAZE00000001	CDS	115401831	115402058	+
GWHAAZE00000001	CDS	115402143	115402202	+
GWHAAZE00000001	CDS	115402496	115402576	+
GWHAAZE00000001	CDS	115402686	115402779	+
GWHAAZE00000001	CDS	115402871	115402962	+

Transcript Sequence
>GWHTAAZE004342 GGAGTTGTTAGTGGCTTAGGGAAAGGAGTTACTGCTAGCAGTATTGGCCTTATTCTCAAGGCCTGTGGTCTTCGTAGGAGTTGTCTTGATCCAATAATTTCTTCTTGTGGACTTCTGCTTAGTTTGTTCTTTACGTTTAATTCAGATCCATACTTGAATACTGATGCGGGAACTATGTCCCCTTTTGAGCACGGCGAAGTGTTTGTCTTGGACGATGGAGGAGAGGTGGACTTGGACCTCGGAAACTATGAGCGTTTCCTAGATATAAAGATGACAAGCGATAATAACATCACTACCGGAAAGATATACCAGGCAAGTTGGGGGTTATTTATACATTCTGTGATAGATAAGGAAAGAAGGGGCGATTATCTGGGGAGAACTGTTCAAGTTGTACCTCACATCACCGATGCCATTCAAGAGTGGATAGAGCGTGTAGCGGCCATACCAGTTGATGGAAAAGAAGGCCCGGCCGATGTTTGTGTCATAGAATTGGGTGGCACTATAGGGGACATTGAATCAATGCCGTTTATTGAGGCGCTTGGGCAGTTTTCCTACCGAGTTGGTGCTGGAAACTTCTGTTTGATACACGTGAGCCTTGTGCCTGTGTTGAGTGTTGTTGGTGAACAGGAACTTGATGAAAACGTGAAGGACAAACTCTCCCGCTTTTGCCATGTTCCGGCTGAGAACATCATCACTCTCTACGATGTTTCCAACATTTGGCGCATTCCTTTGCTCTTAAAAGAGCAGAAGGCTCATGAATCAATATTGAAAGTGCTGAACCTTTTAGGCATTGCTCGTAAGCCTGTTTTGGGGGAATGGAAATCTAGGGCTCAACTCTGTGACATGTTACACGAACCAGTCAGAGTCGCCATGGTTGGAAAGTATACTGGCCTTTCCGACTCATACCTATCTGTACTGAAGGCTCTGTTGCACGCTTCTGTTGCTTGCCAAAGAAAACTGATAGTAGATTGGATCCCAGCCAGTGACCTTGAAGATGAAACTGCAAATGAGAATCCTGATGCTTATAAAGCCGCTTGGAATTTATTGAAGGGTGCAGATGGGGTACTTGTTCCTGGAGGATTTGGTGACAGAGGAGTGGAAGGGAAAATCATTGCGGCAAAGTATGCCCGTGAGAGAAGGATTCCGTATCTAGGAATATGTTTGGGAATGCAAATTGCTGTGATTGAGTTTGCTCGATCCGTTCTTGGGCTTGAGGATGCAAACAGCACCGAGTTTGATCCAAATACTGAGAATCCTTGTGTTATATTTATGCCAGAGGGTTCGAAAACCCATATGGGAGGTACTATGCGACTCGGCTCAAGGAGAACATACTTTCAAGTGAATCCTGATATGGTAGCACAGCTTGAACAAGCTGGTCTTTCTTTTACTGGCAAGGATGAAAGTGGTCAGCGCATGGAGATTGTTGAGCTGCCGACTCATCCATACTTTGTTGGTGTTCAATTCCATCCCGAGTTCAAATCAAGACCAGGAAAACCTTCTGCTCTTTTCTTAGGGCTTATAGCAGCAGCAAGTGGGCAACTGGATGGTCTCTTAAAGAAGGAATCCACAAAGACGGTCGATTGGGCAATGGCACCTCTTCAATAA

Network for GWHGAAZE004336

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06418.15	CTP_synth_N	1	209	5.80E-77
PF00117.29	GATase	298	508	8.40E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01937	pyrG, CTPS	Metabolic pathways	map01100
K01937	pyrG, CTPS	Pyrimidine metabolism	map00240

Gene Ontology

GO term	Ontology	Name
GO:0006221	biological_process	pyrimidine nucleotide biosynthetic process
GO:0006241	biological_process	CTP biosynthetic process
GO:0003883	molecular_function	CTP synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	115.009
	SRR3591706	second leaf	49.854
	SRR3591707	mature leaf	12.264
	SRR3591708	Shoot apex	136.962
	SRR3591709	Stem	24.157
	SRR3591710	White floral bud	11.383
	SRR3591711	White flower	6.246
	SRR3591712	Green floral bud	17.496
	SRR3591713	Yellow flower	0.948
SRP173429	SRR8316895	Juvenile bud stage	5.052
	SRR8316896	Juvenile bud stage	7.950
	SRR8316897	Juvenile bud stage	4.047
	SRR8316894	Third green stage	3.504
	SRR8316900	Third green stage	5.616
	SRR8316901	Third green stage	5.723
	SRR8316898	Complete white stage	0.576
	SRR8316899	Complete white stage	8.050
	SRR8316903	Complete white stage	1.471
	SRR8316902	Silver flowering stage	0.204
	SRR8316904	Silver flowering stage	0.365
	SRR8316905	Silver flowering stage	0.159
	SRR8316906	Gold flowering stage	1.484
	SRR8316907	Gold flowering stage	1.093
	SRR8316908	Gold flowering stage	3.752
SRP132670	SRR6706286	Control	11.123
	SRR6706287	Light intensity 50%	12.002
	SRR6706288	Light intensity 20%	12.849
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.407
	CNS0095593	Slightly white alabastrum(diploid) 2	9.340
	CNS0095594	Slightly white alabastrum(diploid) 3	7.967
	CNS0095595	Whole white alabastrum(diploid) 2	9.329
	CNS0095596	Whole white alabastrum(diploid) 3	2.929
	CNS0095597	Whole white alabastrum(diploid) 4	4.458
	CNS0095598	Silvery flower (diploied) 1	4.770
	CNS0095599	Silvery flower (diploied) 2	3.139
	CNS0095600	Silvery flower (diploied) 3	1.196
	CNS0095601	Golden flower (diploid) 1	5.700
	CNS0095602	Golden flower (diploid) 2	3.641
	CNS0095603	Golden flower (diploid) 3	4.165
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.826
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.624
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.762
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.789
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.870
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.682
	CNS0095610	Silvery flower (tetraploid) 1	0.315
	CNS0095611	Silvery flower (tetraploid) 2	1.183
	CNS0095612	Silvery flower (tetraploid) 3	0.688
	CNS0095613	Golden flower (tetraploid) 1	0.719
	CNS0095614	Golden flower (tetraploid) 2	0.570
	CNS0095615	Golden flower (tetraploid) 3	0.270
CRA001975	CRR073297	Stem 1	23.165
	CRR073298	Stem 2	18.684
	CRR073299	Stem 3	14.046
	CRR073300	Leaf 1	21.450
	CRR073301	Leaf 2	19.267
	CRR073302	Leaf 3	12.894
	CRR073303	Juvenile bud 1	8.166
	CRR073304	Juvenile bud 2	8.402
	CRR073305	Juvenile bud 3	8.442
	CRR073306	Third green 1	0.320
	CRR073307	Third green 2	0.168
	CRR073308	Third green 3	0.328
	CRR073309	Second white 1	0.102
	CRR073310	Second white 2	0.758
	CRR073311	Second white 3	0.375
	CRR073312	Silver flowering 1	1.069
	CRR073313	Silver flowering 2	1.170
	CRR073314	Silver flowering 3	0.619
	CRR073315	Gold flowering 1	1.108
	CRR073316	Gold flowering 2	1.906
	CRR073317	Gold flowering 3	1.168
	CRR073318	Tawny withering 1	17.167
	CRR073319	Tawny withering 2	34.263
	CRR073320	Tawny withering 3	15.017