Gene detail

Detail information of GWHGAAZE004340

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010655868.1	0	PREDICTED: protein prune homolog isoform X1 [Vitis vinifera]
trEMBL	tr\|B9SLV6\|B9SLV6_RICCO	0	Putative uncharacterized protein {ECO:0000313\|EMBL:EEF35402.1}

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	115486748	115492973	+
GWHAAZE00000001	mRNA	115486748	115492973	+
GWHAAZE00000001	exon	115486748	115487378	+
GWHAAZE00000001	exon	115487912	115488096	+
GWHAAZE00000001	exon	115488723	115488803	+
GWHAAZE00000001	exon	115488885	115488926	+
GWHAAZE00000001	exon	115489034	115489078	+
GWHAAZE00000001	exon	115489828	115489914	+
GWHAAZE00000001	exon	115490448	115490574	+
GWHAAZE00000001	exon	115490666	115490746	+
GWHAAZE00000001	exon	115491188	115491313	+
GWHAAZE00000001	exon	115491518	115491582	+
GWHAAZE00000001	exon	115491730	115491835	+
GWHAAZE00000001	exon	115492873	115492973	+
GWHAAZE00000001	CDS	115486748	115487378	+
GWHAAZE00000001	CDS	115487912	115488096	+
GWHAAZE00000001	CDS	115488723	115488803	+
GWHAAZE00000001	CDS	115488885	115488926	+
GWHAAZE00000001	CDS	115489034	115489078	+
GWHAAZE00000001	CDS	115489828	115489914	+
GWHAAZE00000001	CDS	115490448	115490574	+
GWHAAZE00000001	CDS	115490666	115490746	+
GWHAAZE00000001	CDS	115491188	115491313	+
GWHAAZE00000001	CDS	115491518	115491582	+
GWHAAZE00000001	CDS	115491730	115491835	+
GWHAAZE00000001	CDS	115492873	115492973	+

Transcript Sequence
>GWHTAAZE004346 GAACAATATACTCGTGCTCGTGATAACCCAATGTTTGATGGGATGAGAAAACGTGGTGCATCTTGGATGAACAGTGCACCTCTCACTGATCTTCAAGGAAAGGCTACTAGGCAGGACATTCTTCGTTCATCGTCAGATATTGGTGATAGACAACCTAGAAAGATTCTTATGGATATATCTGAAAATGTTACTAACAGTCCAAAAGATTCACCCTCAGACATTATTCTAGAACCTTTTGGCCGTTCTTCATCGGGGAGGTGGTCTAAGATTGACAAAACTTCACTTCCTTCAAGTATTCAATCAGATTTGAGCATCGATTTCGAGGATAAAATTCAGTTGTCATCTAGTTCAAAGGGCAACGAAGTAAGTGAAGAAGGGTATACTATACCCAGTTTCACAATGCCAGCAATTGAGAGATTGTATAGCGTGAATAAGAGGTCAAATCTCTCTCGAATTCCACTCCCTCCCTCTGCAGCATCGTTCTATAATGGGTATTCACCAAAAATGGAAATTGTGGAATTGTGTGAAAGCATTAACAGGCTAAATTTGTATCTGAAAGCTAGAAGGGACGACGTCAATGCAGGTGTGCCAGGAAAGTTCTTGCATGCTGTAATGGGGCAGGATATCTGTGATGTTGGATCAGTCGCTTCAACCATCTTATATGCATTCTACTTGAATGAAACACTGAAGAATGAACAGTTCTGCACTGTACCTGTTATCAACATGAAGAGACAAGATCTCAATTCTCATGCTGAGCTCAAATGGCTACTTGTTTCCTGCAATATTGACCAGTCGTCCTTGACTTTTGTTGACGAGATTGACCTGTCATATTATGATCTATTTGGGAGTCTTAAACTAGTTTTACTGAATGACAACAAGCTTCCAGCCAAACAAGAGGCACTAAAGGAGGGCTTGGTCGAAATCTTCCACTGCAAAAAGGCTGATCCCATATATCCTTGGGTTGATAAAGTCATTGTGGCAGAGGATTGCTCATGTTGTACGGTTATAGCTGAAAAATTTGCAATGGCTTCACCAGAGATTTTAATTGGCAGAGGATTCAGTCGGCTTCTGCTATCAGGCATCCTTTTGGATACCGGAAACTTGACTAATCCTAATTGCACTTCCAAAGACAAATACATGGCCACATTGTTGATTAATGGGGCCGGTCGATTCGGATGCAATGGTCTTTACCAGATCTTAAGATACAAAATGTACGATGTTTCCGACCTTAAAGTAGGAGAAATTTTGCGGAAGGATTTCAAGAAGTGGACAAGAATAGGTAAGCCAGAGAGGATTGGTTCAAGAGCGATGGTGTCGCATGTTGGGATGAGTTCAATTGGTATATCAGTTGATCAACTTCTGTCTCATGAGGGTACTTCACTGCAAGAAATCATAAATTTCCAGCAGTTAGAGAAACTTCGGCTAGTCATGATTGTTTCTGGCTATTATGATTCTCAGAAGAACTTCAAGAGAGAAATCCTGGTCTCTGCTGAATCCCCCGAGCTTATGAAAAACCTACTTCATTTCTTCAACTTGAACGCATCCCAACTGCCACTTAAAGTTCTGAATCAACCAGGTCTAAGAGATGAAATGAGAGCATTCGAGATTGATAAGGTTACCTCAAGGAAGACTATTGAGCGGCTATTGGAAGAATTTGGCGGCGCATCAAAACGCTGA

Network for GWHGAAZE004340

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02833.15	DHHA2	405	543	3.90E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01514	PRUNE, PPX1	Metabolic pathways	map01100
K01514	PRUNE, PPX1	Purine metabolism	map00230

Gene Ontology

GO term	Ontology	Name
GO:0005737	cellular_component	cytoplasm
GO:0016462	molecular_function	pyrophosphatase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.841
	SRR3591706	second leaf	0.477
	SRR3591707	mature leaf	0.110
	SRR3591708	Shoot apex	1.778
	SRR3591709	Stem	0.822
	SRR3591710	White floral bud	0.178
	SRR3591711	White flower	0.337
	SRR3591712	Green floral bud	0.365
	SRR3591713	Yellow flower	0.091
SRP173429	SRR8316895	Juvenile bud stage	2.486
	SRR8316896	Juvenile bud stage	3.329
	SRR8316897	Juvenile bud stage	1.230
	SRR8316894	Third green stage	1.111
	SRR8316900	Third green stage	2.500
	SRR8316901	Third green stage	1.988
	SRR8316898	Complete white stage	0.326
	SRR8316899	Complete white stage	2.170
	SRR8316903	Complete white stage	0.469
	SRR8316902	Silver flowering stage	0.428
	SRR8316904	Silver flowering stage	0.445
	SRR8316905	Silver flowering stage	0.155
	SRR8316906	Gold flowering stage	0.364
	SRR8316907	Gold flowering stage	0.419
	SRR8316908	Gold flowering stage	0.150
SRP132670	SRR6706286	Control	0.297
	SRR6706287	Light intensity 50%	0.430
	SRR6706288	Light intensity 20%	0.937
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.027
	CNS0095593	Slightly white alabastrum(diploid) 2	1.896
	CNS0095594	Slightly white alabastrum(diploid) 3	2.313
	CNS0095595	Whole white alabastrum(diploid) 2	1.095
	CNS0095596	Whole white alabastrum(diploid) 3	1.413
	CNS0095597	Whole white alabastrum(diploid) 4	1.097
	CNS0095598	Silvery flower (diploied) 1	1.996
	CNS0095599	Silvery flower (diploied) 2	0.921
	CNS0095600	Silvery flower (diploied) 3	0.476
	CNS0095601	Golden flower (diploid) 1	0.976
	CNS0095602	Golden flower (diploid) 2	0.397
	CNS0095603	Golden flower (diploid) 3	0.544
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.564
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.080
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.748
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.670
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.541
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.793
	CNS0095610	Silvery flower (tetraploid) 1	0.241
	CNS0095611	Silvery flower (tetraploid) 2	0.189
	CNS0095612	Silvery flower (tetraploid) 3	0.108
	CNS0095613	Golden flower (tetraploid) 1	0.036
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.965
	CRR073298	Stem 2	1.090
	CRR073299	Stem 3	0.451
	CRR073300	Leaf 1	0.985
	CRR073301	Leaf 2	1.020
	CRR073302	Leaf 3	0.387
	CRR073303	Juvenile bud 1	0.740
	CRR073304	Juvenile bud 2	0.230
	CRR073305	Juvenile bud 3	1.075
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.066
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.535
	CRR073316	Gold flowering 2	1.289
	CRR073317	Gold flowering 3	0.183
	CRR073318	Tawny withering 1	0.975
	CRR073319	Tawny withering 2	0.475
	CRR073320	Tawny withering 3	0.604