Gene detail

Detail information of GWHGAAZE004343

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP34887.1	0	hypothetical protein JCGZ_09175 [Jatropha curcas]
COG	YP_004057141.1	1E-101	alpha-glucosidase
Swissprot	tr\|O04893\|AGLU_SPIOL	0	Alpha-glucosidase (Precursor)
trEMBL	tr\|A0A067KFI3\|A0A067KFI3_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP34887.1}
TAIR10	AT5G11720.1	0	Glycosyl hydrolases family 31 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	115530973	115540080	-
GWHAAZE00000001	mRNA	115530973	115540080	-
GWHAAZE00000001	exon	115540016	115540080	-
GWHAAZE00000001	exon	115536566	115537039	-
GWHAAZE00000001	exon	115535640	115535863	-
GWHAAZE00000001	exon	115534471	115534626	-
GWHAAZE00000001	exon	115533199	115533429	-
GWHAAZE00000001	exon	115532391	115533037	-
GWHAAZE00000001	exon	115530973	115531857	-
GWHAAZE00000001	CDS	115540016	115540080	-
GWHAAZE00000001	CDS	115536566	115537039	-
GWHAAZE00000001	CDS	115535640	115535863	-
GWHAAZE00000001	CDS	115534471	115534626	-
GWHAAZE00000001	CDS	115533199	115533429	-
GWHAAZE00000001	CDS	115532391	115533037	-
GWHAAZE00000001	CDS	115530973	115531857	-

Transcript Sequence
>GWHTAAZE004349 ATGGCTGCTGATCTTCAACTAATTAAGGCTACCTCTGTTTTTGGACAGGATATTCAGAATCTCAACTATGAAACAAGCGGCCGTCTTCGAATCCGGATAACCGACCCGACCCAGTCAAGATGGGAAGTACCCGACCACGTCCTCCCCCGCCTCACTCTCCAACCACCACCGGAAAACCCCCAACCACCGCCACCGGAACCCTACATCCTCTCCTCCCGCAAATCCGACCTAACCCTCACCCTCTTTAACACCACCCCCTTCTCCTTCACAGTAACGCGCCGCTCCTCCGGGGACATTCTCTTCGACACCTCGCCGGCGATCTCAGATTCCGGCACATTTCTCGTCTTCAAGGACCAGTACATCCAGCTCTCCTCCGCACTTCCCTCCGATCGGTCGTCATTGTACGGCCTCGGAGAGCACACCAAGAGTTCGTTCAAATTAGGGCACAATCAAACCCTAACTCTGTGGAATGCTGATATTGGGAGTGCCAATCCAGATGTTAATCTCTATGGATCCCACCCGTTTTACATGGACGTCAGGTCGCCAGATCCCAATGGCAGAGTACCTGCGGGGACCACACACGGTGTGTTGTTGCTCAGCAGCAATGGAATGGATATTTTGTACAGTGGTGAGAGGATTACGTATAAAGTGATCGGCGGTATTATTGACTTGTATTTATTTGCTGGACCTTCGCCGAAGATGGTGATGGATCAGTATACTCAGCTCATTGGCCGGCCAGCACCTATGCCCTACTGGTCCTTTGGGATGCTTTATCTTAGTGATCCACCATTCATTGAGGCTCAATTTCAGCGTGTTTGCTCTACTTTGAATGCCAAATCTAGCCTCCATATTTATCCATATAACTTCAGCAATATTACTCTTCACGAAGACATGATCAACAATCTCAATTTGAGGAAAGGTTTTCACCAGTGCCGATGGGGTTACCGAAGTGTCCATGATGTTCAAGGCGTGGTTGCTCGTTATGCAGAAGCAAAGATCCCTTTGGAGGTTATGTGGACAGATATCGATTACATGGACGCTTACAAAGATTTCACTCTTGACCCCATCAACTTCCCCTTGGATCAGATGAACAAATTCTTAGATATACTTCACCAAAATGGTCAAAAATATGTTCTTATCTTGGACCCTGGTATTAGTGTTAACAAGACATATGGAACCTTCATAAGAGGTATGCAAGCAGACATCTTTATAAAACGCGACAGCATTCCTTACTTGGGTGAGGTTTGGCCAGGGCCCGTTTACTACCCAGATTTCCTAAATCCGAATGGGAGAGTATTTTGGGGTGATGAGATCAGTAGGTTCCAAAAACTCCTCTCATTCGACGGCATTTGGCTTGATATGAATGAGATATCAAATTTTATATCGTCCTCTCCCACTCCTTCATCTACGCTTGATGATCCTCCCTATAAGATTAACAATTCTGGTGTACAAATGCCCATTAACAATAAAACGGTACCGGCTACTTCTCTACATTTCGGTAACATTACAGAATATAATGCACATAATCTTTATGGGTTTTTAGAATCCAAAGCAACTAATCAAGCATTAGTCCATATAAGTGGTAAAAGACCATTTATACTAGCGAGATCAACATTTGTGGGGTCTGGAAAATATACAGCACATTGGACTGGAGACAATGCTGCCACGTGGGACGATTTGGCGTATTCGATTCCGAGTATCTTGAATTTTGGACTTTTTGGAATTCCAATGGTTGGAGCTGATATATGCGGCTTTTCTGGAAACACTACCGAAGAGCTCTGTCGACGTTGGATTCAGCTTGGGGCGTTTTACCCGTTTGCAAGGGATCACTCGTCCAAGGATACTACACGCCAAGAGCTCTATCTATGGGAATCTGTTGCTGAATCTGCACGGAAGGTGCTCGGGCTAAGGTACCGGCTACTCCCCTACTTTTACATGTTAATGTATGAGGCACACATGAAAGGAACCCCAATAGCACGCCCCCTTTTCTTCTCGTTTCCTCAAGACACCAAAACCTATGATATCAGCTCGCAGTTCCTTGTCGGTAAAGGCCTAATGGTGTCCCCCGTGTTGAGCCCAGGTCAAGTCTCGGTCAATGCGTACTTCCCCACCGGAAACTGGTTCAACATGTTCAACTATTCTAGCTCGTTGAGCATAGAACTGGGAAAGTACGTCACGCTTGATGCACCGCCCGGTGATATTAATGTGCACGTGCGTGAGGGGAATGTGTTGGCCTTGCAAGGAGAGGCTATGACAACAGAGACATCCCGCAAAACAAAGTTTGAGTTGTTGGTTGTTGTTAGTAATGGCGAAAATATGACCGGAGAAGTGTTTGTGGATGACGGAGAGGAATTGGAGATGGGAGGGGATGGAGGGCGATGGACGTTAGTGAGATTTAATGGTAACATTAACGAGAATATGGTCACGGTCGGGACAGAAGTTGTTAACGGGGGATATGCTTTGAGTGAGAAGTTGGTTTTTGAGAAGGTGACATTTTTAGGGTTGAGTAAAGGTAAGAATTCAAAGGGCCATGAAGTGATGAATAATGTGGGAAGAAAATTGAAGGGAAATGTGGGAATTAGGACAAGTTTTGATTGGAGTGGAGAGTTTGGTAGAGCGGAGATAACTGGGTTGTCTTTGCTTATAGGCGAAGAGTTTACGTTGGTGTTGTATCTCAGCTGA

Network for GWHGAAZE004343

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16863.6	NtCtMGAM_N	2	128	1.40E-28
PF13802.7	Gal_mutarotas_2	133	198	1.90E-08
PF01055.27	Glyco_hydro_31	225	744	9.50E-150

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01187	malZ	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Galactose metabolism	map00052
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0030246	molecular_function	carbohydrate binding
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.601
	SRR3591706	second leaf	15.198
	SRR3591707	mature leaf	26.468
	SRR3591708	Shoot apex	12.192
	SRR3591709	Stem	20.440
	SRR3591710	White floral bud	22.246
	SRR3591711	White flower	31.725
	SRR3591712	Green floral bud	17.297
	SRR3591713	Yellow flower	28.939
SRP173429	SRR8316895	Juvenile bud stage	11.041
	SRR8316896	Juvenile bud stage	13.054
	SRR8316897	Juvenile bud stage	8.724
	SRR8316894	Third green stage	5.628
	SRR8316900	Third green stage	21.282
	SRR8316901	Third green stage	16.500
	SRR8316898	Complete white stage	7.761
	SRR8316899	Complete white stage	17.731
	SRR8316903	Complete white stage	13.796
	SRR8316902	Silver flowering stage	5.183
	SRR8316904	Silver flowering stage	8.916
	SRR8316905	Silver flowering stage	4.790
	SRR8316906	Gold flowering stage	11.386
	SRR8316907	Gold flowering stage	10.988
	SRR8316908	Gold flowering stage	12.372
SRP132670	SRR6706286	Control	37.880
	SRR6706287	Light intensity 50%	32.922
	SRR6706288	Light intensity 20%	30.473
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.589
	CNS0095593	Slightly white alabastrum(diploid) 2	10.147
	CNS0095594	Slightly white alabastrum(diploid) 3	10.963
	CNS0095595	Whole white alabastrum(diploid) 2	10.481
	CNS0095596	Whole white alabastrum(diploid) 3	10.717
	CNS0095597	Whole white alabastrum(diploid) 4	9.869
	CNS0095598	Silvery flower (diploied) 1	25.428
	CNS0095599	Silvery flower (diploied) 2	17.910
	CNS0095600	Silvery flower (diploied) 3	30.080
	CNS0095601	Golden flower (diploid) 1	29.523
	CNS0095602	Golden flower (diploid) 2	36.927
	CNS0095603	Golden flower (diploid) 3	34.949
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.600
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.053
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.470
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.352
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.847
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.434
	CNS0095610	Silvery flower (tetraploid) 1	36.356
	CNS0095611	Silvery flower (tetraploid) 2	52.047
	CNS0095612	Silvery flower (tetraploid) 3	16.117
	CNS0095613	Golden flower (tetraploid) 1	9.309
	CNS0095614	Golden flower (tetraploid) 2	24.314
	CNS0095615	Golden flower (tetraploid) 3	4.601
CRA001975	CRR073297	Stem 1	18.928
	CRR073298	Stem 2	17.845
	CRR073299	Stem 3	15.271
	CRR073300	Leaf 1	25.935
	CRR073301	Leaf 2	25.866
	CRR073302	Leaf 3	23.938
	CRR073303	Juvenile bud 1	22.598
	CRR073304	Juvenile bud 2	28.784
	CRR073305	Juvenile bud 3	27.381
	CRR073306	Third green 1	13.490
	CRR073307	Third green 2	7.878
	CRR073308	Third green 3	10.538
	CRR073309	Second white 1	6.456
	CRR073310	Second white 2	3.725
	CRR073311	Second white 3	3.074
	CRR073312	Silver flowering 1	1.973
	CRR073313	Silver flowering 2	1.340
	CRR073314	Silver flowering 3	2.890
	CRR073315	Gold flowering 1	4.241
	CRR073316	Gold flowering 2	6.222
	CRR073317	Gold flowering 3	4.209
	CRR073318	Tawny withering 1	7.279
	CRR073319	Tawny withering 2	3.841
	CRR073320	Tawny withering 3	3.820