Gene detail

Detail information of GWHGAAZE004353

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009789754.1	0	PREDICTED: UDP-arabinose 4-epimerase 1 [Nicotiana sylvestris]
COG	YP_005445125.1	1E-93	UDP-glucose 4-epimerase
Swissprot	tr\|Q9SA77\|ARAE1_ARATH	0	UDP-arabinose 4-epimerase 1
trEMBL	tr\|K4B7U0\|K4B7U0_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc02g069580.2.1}
TAIR10	AT1G30620.2	0	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	115670468	115676612	-
GWHAAZE00000001	mRNA	115670468	115676612	-
GWHAAZE00000001	exon	115676573	115676612	-
GWHAAZE00000001	exon	115674312	115674436	-
GWHAAZE00000001	exon	115673824	115673937	-
GWHAAZE00000001	exon	115673598	115673705	-
GWHAAZE00000001	exon	115673195	115673286	-
GWHAAZE00000001	exon	115672354	115672495	-
GWHAAZE00000001	exon	115672099	115672193	-
GWHAAZE00000001	exon	115671664	115671793	-
GWHAAZE00000001	exon	115671335	115671479	-
GWHAAZE00000001	exon	115670468	115670706	-
GWHAAZE00000001	CDS	115676573	115676612	-
GWHAAZE00000001	CDS	115674312	115674436	-
GWHAAZE00000001	CDS	115673824	115673937	-
GWHAAZE00000001	CDS	115673598	115673705	-
GWHAAZE00000001	CDS	115673195	115673286	-
GWHAAZE00000001	CDS	115672354	115672495	-
GWHAAZE00000001	CDS	115672099	115672193	-
GWHAAZE00000001	CDS	115671664	115671793	-
GWHAAZE00000001	CDS	115671335	115671479	-
GWHAAZE00000001	CDS	115670468	115670706	-

Transcript Sequence
>GWHTAAZE004359 ATGGCAGTAGAAGAGAAAATTCTTCGCACTACAAAAACAGGCATGGATTACGTGGACCCAAAAAAGAAGAACAATTTTGTAGGAAAAATTCTGTTGGCGGCTGCTCTTACAGCATTATGCATTCTTATGCTCAAGCAATCCCCATCTTTCAATACCCCAAGTGCATTCTCTCGTCACGAAGTAGGTGTAACTCATGTCTTGGTCACGGGAGGTGCTGGCTATATTGGTTCTCATGCTGCACTAAGACTTCTAAAGGATTCACACCGTGTAACTATAGTGGACAATCTATCTCGTGGAAACCTAGGCGCCGTCAAGATTCTACAAGAACTATTCCCAGAACCGGGAAGACTTCAGTTTATATATGCCGATTTGGGCGATGCAAAAGCTGTGAACAAAATATTTTCAGAGAATGCATTTGATGCTGTAATGCATTTTGCAGCTGTTGCTTATGTAGGAGAGAGCACCCTTGATCCTCTCAAGTATTATCACAATATTACATCAAATACGCTGGTGGTATTAGAGGCTATGGCTGCACATGGGGTGAGGACTTTAATATATTCAAGTACTTGTGCGACTTACGGGGAGCCTGAAAAAATGCCCATTACAGAAGAAACTCCTCAGTTCCCTATAAATCCTTATGGAAAAGCCAAGAAGATGGCTGAAGATATCATCCTTGATTTCCATAGAAACTCCAATATGGCTGTCATGATCTTAAGGTACTTCAATGTGATTGGTTCAGATCCAGAAGGAAGGTTAGGAGAAGCTCCAAGGCCAGAACTTCGGGAGCATGGACGGATATCAGCTGCTTGCTTTGATGCTGCTCGGGGAATAATTCCAGGGCTTAAGGTTAGAGGAACAGACTATAAAACAGCAGATGGCACTTGCGTACGCGATTACATTGACGTGACCGATTTGGTTGATGCTCATGTGAAAGCTCTCGGAAAGGCAAAGCCTGGCCAAGTTGGAATCTACAATGTTGGAACAGGAAGAGGTAGATCAGTGAAGGAGTTTGTGGAGGCTTGTAAGACAGCAACTGGAGTTGATATCAAAGTTGACTTTCTCCCTCGCCGCCCCGGTGACTATGCTGAAGTGTTCAGCGACCCTTCCAAGATCTTGCGTGAGCTCAACTGGACCGCCCATTACACCGATCTTCGAGAAAGTCTGCAGATCGCTTGGAGATGGCAGAAGTCCCACCTTAACGGGTACGGGCCTGGCCTGGCCTCAGCCTAA

Network for GWHGAAZE004353

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16363.6	GDP_Man_Dehyd	67	382	2.40E-54

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12448	UXE, uxe	Metabolic pathways	map01100
K12448	UXE, uxe	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0006012	biological_process	galactose metabolic process
GO:0003978	molecular_function	UDP-glucose 4-epimerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.131
	SRR3591706	second leaf	32.303
	SRR3591707	mature leaf	22.365
	SRR3591708	Shoot apex	30.407
	SRR3591709	Stem	60.842
	SRR3591710	White floral bud	69.426
	SRR3591711	White flower	81.649
	SRR3591712	Green floral bud	35.860
	SRR3591713	Yellow flower	118.945
SRP173429	SRR8316895	Juvenile bud stage	28.403
	SRR8316896	Juvenile bud stage	38.916
	SRR8316897	Juvenile bud stage	20.067
	SRR8316894	Third green stage	15.369
	SRR8316900	Third green stage	45.890
	SRR8316901	Third green stage	46.722
	SRR8316898	Complete white stage	35.963
	SRR8316899	Complete white stage	60.012
	SRR8316903	Complete white stage	50.434
	SRR8316902	Silver flowering stage	37.223
	SRR8316904	Silver flowering stage	44.112
	SRR8316905	Silver flowering stage	18.992
	SRR8316906	Gold flowering stage	101.604
	SRR8316907	Gold flowering stage	101.244
	SRR8316908	Gold flowering stage	120.206
SRP132670	SRR6706286	Control	32.737
	SRR6706287	Light intensity 50%	31.677
	SRR6706288	Light intensity 20%	33.541
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	37.561
	CNS0095593	Slightly white alabastrum(diploid) 2	44.106
	CNS0095594	Slightly white alabastrum(diploid) 3	43.912
	CNS0095595	Whole white alabastrum(diploid) 2	41.191
	CNS0095596	Whole white alabastrum(diploid) 3	43.707
	CNS0095597	Whole white alabastrum(diploid) 4	41.654
	CNS0095598	Silvery flower (diploied) 1	40.403
	CNS0095599	Silvery flower (diploied) 2	29.756
	CNS0095600	Silvery flower (diploied) 3	55.023
	CNS0095601	Golden flower (diploid) 1	39.410
	CNS0095602	Golden flower (diploid) 2	63.804
	CNS0095603	Golden flower (diploid) 3	60.962
	CNS0095604	Slightly white alabastrum(tetraploid) 1	46.137
	CNS0095605	Slightly white alabastrum(tetraploid) 2	40.499
	CNS0095606	Slightly white alabastrum(tetraploid) 3	42.932
	CNS0095607	Whole white alabastrum(tetraploid) 1	33.095
	CNS0095608	Whole white alabastrum(tetraploid) 2	23.116
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.572
	CNS0095610	Silvery flower (tetraploid) 1	75.471
	CNS0095611	Silvery flower (tetraploid) 2	51.102
	CNS0095612	Silvery flower (tetraploid) 3	91.279
	CNS0095613	Golden flower (tetraploid) 1	55.207
	CNS0095614	Golden flower (tetraploid) 2	82.224
	CNS0095615	Golden flower (tetraploid) 3	57.413
CRA001975	CRR073297	Stem 1	35.160
	CRR073298	Stem 2	30.241
	CRR073299	Stem 3	39.495
	CRR073300	Leaf 1	42.106
	CRR073301	Leaf 2	38.377
	CRR073302	Leaf 3	41.496
	CRR073303	Juvenile bud 1	46.071
	CRR073304	Juvenile bud 2	54.205
	CRR073305	Juvenile bud 3	48.900
	CRR073306	Third green 1	70.298
	CRR073307	Third green 2	64.711
	CRR073308	Third green 3	72.176
	CRR073309	Second white 1	93.283
	CRR073310	Second white 2	83.113
	CRR073311	Second white 3	75.401
	CRR073312	Silver flowering 1	104.450
	CRR073313	Silver flowering 2	127.362
	CRR073314	Silver flowering 3	98.332
	CRR073315	Gold flowering 1	42.228
	CRR073316	Gold flowering 2	48.244
	CRR073317	Gold flowering 3	40.979
	CRR073318	Tawny withering 1	134.054
	CRR073319	Tawny withering 2	152.559
	CRR073320	Tawny withering 3	94.507