Gene detail

Detail information of GWHGAAZE004363

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI31090.3	2.3835E-179	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9SA80\|WRK14_ARATH	8E-97	Probable WRKY transcription factor 14
trEMBL	tr\|A0A068UWC7\|A0A068UWC7_COFCA	2E-160	Coffea canephora DH200=94 genomic scaffold, scaffold_68 {ECO:0000313\|EMBL:CDP12602.1}
TAIR10	AT1G30650.1	3E-74	WRKY DNA-binding protein 14

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	115810264	115813370	+
GWHAAZE00000001	mRNA	115810264	115813370	+
GWHAAZE00000001	exon	115810264	115810805	+
GWHAAZE00000001	exon	115811520	115811654	+
GWHAAZE00000001	exon	115812728	115813370	+
GWHAAZE00000001	CDS	115810264	115810805	+
GWHAAZE00000001	CDS	115811520	115811654	+
GWHAAZE00000001	CDS	115812728	115813370	+

Transcript Sequence
>GWHTAAZE004369 ATGGAGAATTATCAAGGAGATTTGGCTGACATAATCCGAGCTAGCGGAGGAGGAGGTGGTGGGATCGGAATCAGCACCACCGCCTCCTCTGGAGAACTGCCAGCAGTCAGTGTCACTGACAACTGGCAATTCCAGTCTGATTACCCTCCTGTAGATCTACCGGAGGATTTCGGCCACCCGTTCTCCAACTTCCGAGATCCGCTCCTCCACGAGCTAGATATCCCTGGCTCAGGTTTTTTCAGCAGCTCAGGTGGGCCCACGGACTTGGCGATGAAGCCCAATATCGAAGATCAAAAGATTCTTAGTGAAGACATGAAGATAAGGCCTTGTAATATCTTCTCAAGGATGCTCCAGATCTCTTCAAACCCTAATTTACAGGTGTCTCCGTGTGAGTCACCGTTATTGGGCTCTTCGCCACGGGGGATCAGCTCTCCTAGCTTGGTTTCTAATGATATGATTAGCGCAAATACTTCCAAAAGTTGCTTGCTCGAAAATAGCGCGATGCAGATCTCATCTCCGCGAAATACTGGTATTAAGCGAAGCCAGGCAAAGAAGGTGGTGTGTATACCAGCACCAGCACCAGCAAATAGTAGGCCTACTGGAGAAATAGTTCCATCTGATCTTTGGGCATGGAGAAAGTATGGTCAAAAGCCCATTAAAGGATCCCCTTATCCTAGGGGGTATTATAGATGCAGTAGCTCAAAGGGTTGTTCAGCTAGGAAGCAAGTCGAACGGAGCCGGACCGACCCGAATATGCTAGTGATAACCTACACTTCTGAACATAACCATCCATGGCCAACACAAAGAAATGCACTTGCAGGCTCTACTAGAACCCAACCCTCGAAAAACACTAATTCCTCTTTATCATCTTCTAAAATTTCCTCTCTAAAAGGCCCAAACTTTAAGGAAGAACAAAAGGAGACTAGTGCTAATATTAATAACGTGGATAATAATGCATCTTCCTCAATTGTCATGGGGAATTCGACGAGCGTGAAAGAGGAGATGGAAGAACTTCTTGATAATAAGGAAATGGAGATGGATGACATTAGTGATCAATTTAGTGAAGGGTTTCCTCAGAGTTACAGGCCAGCATTGCCAGATTCTAACAACCATTCTGAGGATTTCTTTGCTGATTTGGGAGAAATAGAGGCCGACCCTCTAAATCTATTGTTTACTCAAGGGTTTTCGGGAGATGAGGAGAGGGAAAACAAGGCTTTGGATCCGTTTAGTTTCTATGATTGGACTGGAAACAATAACAGCAGCAGCAGCAACAACAACAACAACAATACGTCGTTTGGTGAAGCTAAAAGAGGTTCATAA

Network for GWHGAAZE004363

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	207	264	2.40E-25

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.160
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.074
	SRR3591708	Shoot apex	1.233
	SRR3591709	Stem	2.999
	SRR3591710	White floral bud	3.057
	SRR3591711	White flower	9.887
	SRR3591712	Green floral bud	0.242
	SRR3591713	Yellow flower	25.140
SRP173429	SRR8316895	Juvenile bud stage	0.303
	SRR8316896	Juvenile bud stage	0.180
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.403
	SRR8316900	Third green stage	0.218
	SRR8316901	Third green stage	0.312
	SRR8316898	Complete white stage	0.907
	SRR8316899	Complete white stage	1.455
	SRR8316903	Complete white stage	0.960
	SRR8316902	Silver flowering stage	2.946
	SRR8316904	Silver flowering stage	6.343
	SRR8316905	Silver flowering stage	3.146
	SRR8316906	Gold flowering stage	15.616
	SRR8316907	Gold flowering stage	14.021
	SRR8316908	Gold flowering stage	21.312
SRP132670	SRR6706286	Control	0.574
	SRR6706287	Light intensity 50%	0.710
	SRR6706288	Light intensity 20%	0.675
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.031
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.227
	CNS0095596	Whole white alabastrum(diploid) 3	0.049
	CNS0095597	Whole white alabastrum(diploid) 4	0.023
	CNS0095598	Silvery flower (diploied) 1	2.784
	CNS0095599	Silvery flower (diploied) 2	1.518
	CNS0095600	Silvery flower (diploied) 3	5.956
	CNS0095601	Golden flower (diploid) 1	1.118
	CNS0095602	Golden flower (diploid) 2	9.425
	CNS0095603	Golden flower (diploid) 3	10.728
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.720
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.526
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.693
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.638
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.167
	CNS0095610	Silvery flower (tetraploid) 1	3.215
	CNS0095611	Silvery flower (tetraploid) 2	3.891
	CNS0095612	Silvery flower (tetraploid) 3	4.779
	CNS0095613	Golden flower (tetraploid) 1	4.172
	CNS0095614	Golden flower (tetraploid) 2	10.942
	CNS0095615	Golden flower (tetraploid) 3	12.298
CRA001975	CRR073297	Stem 1	0.095
	CRR073298	Stem 2	0.397
	CRR073299	Stem 3	0.189
	CRR073300	Leaf 1	0.371
	CRR073301	Leaf 2	0.509
	CRR073302	Leaf 3	0.494
	CRR073303	Juvenile bud 1	0.260
	CRR073304	Juvenile bud 2	0.227
	CRR073305	Juvenile bud 3	0.431
	CRR073306	Third green 1	4.180
	CRR073307	Third green 2	3.895
	CRR073308	Third green 3	4.340
	CRR073309	Second white 1	2.677
	CRR073310	Second white 2	1.876
	CRR073311	Second white 3	1.504
	CRR073312	Silver flowering 1	2.679
	CRR073313	Silver flowering 2	4.032
	CRR073314	Silver flowering 3	3.144
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	2.064
	CRR073319	Tawny withering 2	1.539
	CRR073320	Tawny withering 3	2.030