Gene detail

Detail information of GWHGAAZE004369

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFK35084.1	7.94776E-91	unknown [Lotus japonicus]
Swissprot	tr\|Q9CAZ0\|SKI24_ARATH	5E-72	F-box protein SKIP24
trEMBL	tr\|I3S492\|I3S492_LOTJA	3E-91	Uncharacterized protein {ECO:0000313\|EMBL:AFK35084.1}
TAIR10	AT1G08710.2	3E-50	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	115922103	115926094	+
GWHAAZE00000001	mRNA	115922103	115926094	+
GWHAAZE00000001	exon	115922103	115922332	+
GWHAAZE00000001	exon	115923682	115923885	+
GWHAAZE00000001	exon	115925495	115925657	+
GWHAAZE00000001	exon	115925918	115926094	+
GWHAAZE00000001	CDS	115922103	115922332	+
GWHAAZE00000001	CDS	115923682	115923885	+
GWHAAZE00000001	CDS	115925495	115925657	+
GWHAAZE00000001	CDS	115925918	115926094	+

Transcript Sequence
>GWHTAAZE004375 ATGTCGTATCTTCCAGATGAGTTATGGAGAAGGATACTAGAAATCGGAATTACCGGAACTTGTTCAAATTTGGTATACAAAGATCTCTGCTCTCTCTCCATCACTTGCCGGCGCTTCAATCGCCTCTCCGCCGATAACTCCCTCTGGTCCTCTCTCTTCTCCTCCGATTTCCCTTCTTCAACGTCTTCGATACCTCCCAATTCTTCCTTCAAGTCACTCTACAAATTCAGTCCCTTTTTTTTGTTAATAAAATCAATTAGGTTTGAGAGGGACAAAGAGCGGAAGCTTTTGGCACATAGAAGGACTGTTCTTAGAGTAGAGAGTCGCATTGCCGAGCATTCCAGAAAGATTCAGGAAATACAGCGGGGATTGGCTGCGGAGAGTGAGAAATTTAATTCAACACTTTTGGAATTATCAAATTTACGGAGGGTCAGGCAAGCTTCAACAGCATTGAATGTGTGGCAGCCAGAGGTTATTCGTAGTCGGCAAAAACAAATAGTTGAGCAATCTGTTGTACCTGCAGACTATCGAATCCATGCACTTGAGATGGAGCTTAAGCTTTGCAAACAACAAATAGCGGGGTTTGATAAGGCTCATACAGATGAGAAGCGAAGGCTTGATGCAGCAAAGGAACAGCTAGCATCGGTAAAGTACCACCCCTTACGAGATTATGACTTGACAAGCAGCAGTGTTGGTGAACGTGGTGTTAAAAGAAAAAAGTCCAAGAAATATGTTGACTGTGAGCCTCTAATTTCCTTCTCGTCCTGTAAATGA

Network for GWHGAAZE004369

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.8	F-box-like	1	53	5.10E-09

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.075
	SRR3591706	second leaf	5.310
	SRR3591707	mature leaf	4.710
	SRR3591708	Shoot apex	7.172
	SRR3591709	Stem	9.003
	SRR3591710	White floral bud	9.027
	SRR3591711	White flower	9.408
	SRR3591712	Green floral bud	7.730
	SRR3591713	Yellow flower	5.209
SRP173429	SRR8316895	Juvenile bud stage	4.553
	SRR8316896	Juvenile bud stage	6.936
	SRR8316897	Juvenile bud stage	3.628
	SRR8316894	Third green stage	2.797
	SRR8316900	Third green stage	9.576
	SRR8316901	Third green stage	7.385
	SRR8316898	Complete white stage	3.645
	SRR8316899	Complete white stage	14.634
	SRR8316903	Complete white stage	6.652
	SRR8316902	Silver flowering stage	2.901
	SRR8316904	Silver flowering stage	5.434
	SRR8316905	Silver flowering stage	2.927
	SRR8316906	Gold flowering stage	9.597
	SRR8316907	Gold flowering stage	9.602
	SRR8316908	Gold flowering stage	11.787
SRP132670	SRR6706286	Control	10.778
	SRR6706287	Light intensity 50%	10.519
	SRR6706288	Light intensity 20%	9.954
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.229
	CNS0095593	Slightly white alabastrum(diploid) 2	7.657
	CNS0095594	Slightly white alabastrum(diploid) 3	7.097
	CNS0095595	Whole white alabastrum(diploid) 2	9.599
	CNS0095596	Whole white alabastrum(diploid) 3	6.980
	CNS0095597	Whole white alabastrum(diploid) 4	5.454
	CNS0095598	Silvery flower (diploied) 1	10.290
	CNS0095599	Silvery flower (diploied) 2	5.920
	CNS0095600	Silvery flower (diploied) 3	8.531
	CNS0095601	Golden flower (diploid) 1	8.238
	CNS0095602	Golden flower (diploid) 2	6.654
	CNS0095603	Golden flower (diploid) 3	7.105
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.285
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.767
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.689
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.508
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.081
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.841
	CNS0095610	Silvery flower (tetraploid) 1	6.432
	CNS0095611	Silvery flower (tetraploid) 2	10.197
	CNS0095612	Silvery flower (tetraploid) 3	7.719
	CNS0095613	Golden flower (tetraploid) 1	5.826
	CNS0095614	Golden flower (tetraploid) 2	9.903
	CNS0095615	Golden flower (tetraploid) 3	5.402
CRA001975	CRR073297	Stem 1	10.576
	CRR073298	Stem 2	12.334
	CRR073299	Stem 3	9.481
	CRR073300	Leaf 1	10.500
	CRR073301	Leaf 2	8.134
	CRR073302	Leaf 3	8.378
	CRR073303	Juvenile bud 1	8.185
	CRR073304	Juvenile bud 2	7.164
	CRR073305	Juvenile bud 3	8.557
	CRR073306	Third green 1	2.019
	CRR073307	Third green 2	4.805
	CRR073308	Third green 3	6.355
	CRR073309	Second white 1	4.447
	CRR073310	Second white 2	4.492
	CRR073311	Second white 3	3.023
	CRR073312	Silver flowering 1	2.212
	CRR073313	Silver flowering 2	1.298
	CRR073314	Silver flowering 3	3.535
	CRR073315	Gold flowering 1	4.299
	CRR073316	Gold flowering 2	2.315
	CRR073317	Gold flowering 3	1.281
	CRR073318	Tawny withering 1	5.937
	CRR073319	Tawny withering 2	6.745
	CRR073320	Tawny withering 3	10.706