Gene detail

Detail information of GWHGAAZE004372

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011096883.1	0	PREDICTED: tetrahydrocannabinolic acid synthase-like [Sesamum indicum]
COG	YP_001698653.1	1E-38	reticuline oxidase
Swissprot	tr\|Q8GTB6\|THCAS_CANSA	1E-161	Tetrahydrocannabinolic acid synthase (Precursor)
trEMBL	tr\|K4CUU2\|K4CUU2_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc09g072660.2.1}
TAIR10	AT2G34790.1	0	FAD-binding Berberine family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	115979627	115981153	+
GWHAAZE00000001	mRNA	115979627	115981153	+
GWHAAZE00000001	exon	115979627	115981153	+
GWHAAZE00000001	CDS	115979627	115981153	+

Transcript Sequence
>GWHTAAZE004378 ATGCAGTGTCTCTCCCTCGATTCTGACGTCCCTCTCCCCATCTCCACAGCGTGCTACACCCCGGACAACTCTTCCTTCAAAACCCTTCTCCAATCCTCCGCTCAAAACCTCCGGTGTTTGGTTCCGTCCGTCCCCAAACCCGAGCTTATCTTCACTCCATTACAAGAATCCCACATCCAAACAGCTGTTATTTGCTCCAAAAAGCTTGGAATCCAGCTCAGGATCCGAAGTGGAGGCCATGACTATGAGGGCCTCTCTTACATATCAGAAATGGAACCTCCATTCGTCGTCATGGACCTCTCAAAACTCCGATCAGTCACTGTTGATATTGAAGACAACACCGCATGGGCCCAGGCTGGGGCTACCGTCGGTGAAGTTTACTATAGAATTGCGGAGAAGAGCAAAGTACACGGCTTTCCAGCGGGTCTTTGCACAAGTTTAGGCGTAGGCGGGCACATTACAGGAGGGGCCTACGGTACCATGATGAGGAAATACGGCCTTGGGGTTGACAATGTGGTTGATGTTCGTATAGTTGATGTGAATGGGAAAATTCTCGATAGACAGTCAATGGGTGAAGATCTATTTTGGGCCCTCAGAGGTGGTGGGGGCGGGAGTTTCGGAGTGATCCTTTCTTGGAAGCTTAAGCTCGTCTCTGTTCCGGCAACCGTGACGGTCTTCACGGTTTCCAAGACACTAGAACAAGGCGGGACAAAGATGTTGTACAAGTGGCAACAAGTTGTAGATAAACTTGATGATGATCTCTTTATCAGAGTCATAATCACCCCGGCAAAACTAGATAAAGGAAATAAGACTATAATAACGTCTTATAACGCGATGTTTTTAGGGGGAGTGGACCGACTTCTTCAAGTAATGAGCCAGAGTTTCCCTGAATTAGGGTTGGCGAAGAAAGACTGTACCGAAATGAGTTGGCTTGAATCACACCTTTATATCGCCGGTTACCCAAAAAACACGCCCCCTGAAGTGTTGCTAGAAGGGAAGTCCACATTCAAAAACTACTTCAAAGCAAAGTCCGATTTTGTGAAAGAACCAATACCCGAGGCTGGGCTCGAAGGTTTATGGAAAAGGCTTCTGGAGGAGGAATCGCCTTTGATGATCTTAACCCCTTACGGTGGAATGATGAGTAGGATCTCCGAGACTGAGACCCCGTTCCCCCATAGAAACGGCACATTGTTCAAGATACAATATGTGACAAGCTGGCAAGACGCGGACAAGGATTCACTAGCGAGACATGAGGACTGGATTCGACGGGTATATAACTACATGGCTTCGTACGTTTCGATGTTTCCTAGGGAAGCGTATGTGAATTACAGGGACCTTGATTTGGGGATGAATAAGAATAGTAGTTCAAGTTTTATACAAGCAAGTGCATGGGGGAAAAAGTATTTCAAAAACAACTTCAATAGATTGGTGAGGATAAAGACCAAGGTTGACCCAGAGAACTTTTTTAGCCATGAACAGAGTATCCCAACTCTTCCGTTAAGAAGCATGAGAAGAGGAAATCAGTGA

Network for GWHGAAZE004372

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01565.24	FAD_binding_4	47	185	1.20E-26
PF08031.13	BBE	439	496	9.60E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K22395	K22395	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0050660	molecular_function	flavin adenine dinucleotide binding
GO:0071949	molecular_function	FAD binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.741
	SRR3591706	second leaf	9.900
	SRR3591707	mature leaf	7.217
	SRR3591708	Shoot apex	13.667
	SRR3591709	Stem	154.482
	SRR3591710	White floral bud	10.862
	SRR3591711	White flower	25.406
	SRR3591712	Green floral bud	16.139
	SRR3591713	Yellow flower	11.911
SRP173429	SRR8316895	Juvenile bud stage	7.246
	SRR8316896	Juvenile bud stage	11.101
	SRR8316897	Juvenile bud stage	4.589
	SRR8316894	Third green stage	6.032
	SRR8316900	Third green stage	14.489
	SRR8316901	Third green stage	12.020
	SRR8316898	Complete white stage	2.812
	SRR8316899	Complete white stage	10.670
	SRR8316903	Complete white stage	5.941
	SRR8316902	Silver flowering stage	2.522
	SRR8316904	Silver flowering stage	5.091
	SRR8316905	Silver flowering stage	1.695
	SRR8316906	Gold flowering stage	10.407
	SRR8316907	Gold flowering stage	3.229
	SRR8316908	Gold flowering stage	14.238
SRP132670	SRR6706286	Control	22.710
	SRR6706287	Light intensity 50%	17.206
	SRR6706288	Light intensity 20%	16.335
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.804
	CNS0095593	Slightly white alabastrum(diploid) 2	12.357
	CNS0095594	Slightly white alabastrum(diploid) 3	7.534
	CNS0095595	Whole white alabastrum(diploid) 2	6.057
	CNS0095596	Whole white alabastrum(diploid) 3	3.534
	CNS0095597	Whole white alabastrum(diploid) 4	5.617
	CNS0095598	Silvery flower (diploied) 1	17.246
	CNS0095599	Silvery flower (diploied) 2	14.740
	CNS0095600	Silvery flower (diploied) 3	12.022
	CNS0095601	Golden flower (diploid) 1	13.811
	CNS0095602	Golden flower (diploid) 2	14.696
	CNS0095603	Golden flower (diploid) 3	16.241
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.262
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.417
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.733
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.208
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.030
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.307
	CNS0095610	Silvery flower (tetraploid) 1	7.258
	CNS0095611	Silvery flower (tetraploid) 2	10.072
	CNS0095612	Silvery flower (tetraploid) 3	2.957
	CNS0095613	Golden flower (tetraploid) 1	3.804
	CNS0095614	Golden flower (tetraploid) 2	11.751
	CNS0095615	Golden flower (tetraploid) 3	8.768
CRA001975	CRR073297	Stem 1	12.514
	CRR073298	Stem 2	17.887
	CRR073299	Stem 3	18.760
	CRR073300	Leaf 1	9.517
	CRR073301	Leaf 2	13.178
	CRR073302	Leaf 3	9.829
	CRR073303	Juvenile bud 1	4.593
	CRR073304	Juvenile bud 2	1.637
	CRR073305	Juvenile bud 3	7.497
	CRR073306	Third green 1	1.036
	CRR073307	Third green 2	1.109
	CRR073308	Third green 3	2.119
	CRR073309	Second white 1	0.816
	CRR073310	Second white 2	0.808
	CRR073311	Second white 3	0.597
	CRR073312	Silver flowering 1	3.703
	CRR073313	Silver flowering 2	4.128
	CRR073314	Silver flowering 3	3.986
	CRR073315	Gold flowering 1	4.510
	CRR073316	Gold flowering 2	4.334
	CRR073317	Gold flowering 3	10.567
	CRR073318	Tawny withering 1	85.624
	CRR073319	Tawny withering 2	106.869
	CRR073320	Tawny withering 3	58.158