Gene detail

Detail information of GWHGAAZE004385

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009623118.1	0	PREDICTED: probable receptor-like protein kinase At1g30570 [Nicotiana tomentosiformis]
COG	YP_005056530.1	0.0000004	glycoside hydrolase family protein
Swissprot	tr\|Q9SA72\|Y1357_ARATH	0	Probable receptor-like protein kinase At1g30570 (Precursor)
trEMBL	tr\|A0A061G7L0\|A0A061G7L0_THECC	0	Hercules receptor kinase 2 isoform 1 {ECO:0000313\|EMBL:EOY25556.1}
TAIR10	AT1G30570.1	0	hercules receptor kinase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	116154521	116157115	-
GWHAAZE00000001	mRNA	116154521	116157115	-
GWHAAZE00000001	exon	116154521	116155107	-
GWHAAZE00000001	exon	116155366	116157115	-
GWHAAZE00000001	CDS	116155366	116157115	-
GWHAAZE00000001	CDS	116154521	116155107	-

Transcript Sequence
>GWHTAAZE004391 ATGATGAAGGTTCAAAGCGTAGGGCTATTGGGCCTAAATATGCTAATCATAGTTTCTCTGTTTGTTAAAAATGGGGAAGCAGAGAATAAGTCTTTTCTGATAAACTGTGGTTCAAATTCTAGTGTTAATGTTGATGATAGGAGATGGGTTGGTGATTTGGCCACCGGCAATAATTTAACCCTAAGTTCTCCTGGAATTGAGGCTTCCACAAACGTGTACAATGGCGATTCAGTGTACTCGCCGATTTATAGAACTGCAAGGTTTTTCACTGAAAGCTTGAATTACACATTTCAAGGAGCAGAGGGAAAGTATTTCCTTAGGCTTCATTTCTATCCATTTTCCTTCGAGAACTATAATGTCAATGATTCTTCTTTTGCTGTTGAGGCAAATGGGCTGAAATTGGCCTTGGAGCTCAATGTCCCCGGTGAGATTTTGAAGAAGAATTTGGTCTTGCAGTCATCAGGAGGGAATTTGAGTATATCCTCTTTGGTGAAGGAGTTTTTCCTCACCGTTGATGCTAGTGTAATCATTGTTGATTTTATTCCGACGAAAGGCTCTTTTGGGTTAATCAATGCCATAGAGATCGTTCCGGTTGCAGATGAGCTGTTTGTTGAAATGGTTAGCAGAGTTGGCGGGAAGGGGGCGAACAGTTCCTTGAATTTGAACAAACGCGGGTTTGAAACTATGTATAGATTGAATGTGGGCGGTCCGGTGATTAAACCTGATCAAGATTTAGATCTAAAAAGAATGTGGGAAGTGGATTCGAGCTATATGCTCACAGCAAATGCTGGTTCGGAAATTAGCAGCCGCGCTAACATCACCTATGGTTCACCAAATGACACCTCGGTGGCTCCTATTCTAGTTTATCAAACAGCAAGAAGTATGTCCAACACCGAAGTGCTCGAGATGAGGTTCAACATGTCTTGGAAATTCCAAGTGGACCCCGGTTTTGATTATCTAGTCCGCTTGCATTTTTGCGAGCTGGTGTTTGATCGTGCGAACCAGAGGAATTTCAGAATCTACATAAATAATCAAACTGCATCGGACAATTTTGATGTTTTTGTTCGAGCTGGTGGCAAGAACAAGGCATATCATCAAGATTATTTTGATGCGATGTCATCGAAAACTGATACACTTTGGGTACAGCTCGGGCCCGACACGACAGCCGGTTCTGCGGGAACCGATGCGCTTTTAAATGGGTTGGAGATTTTCAAGCTGAGCCGAAATGGAAATCTTGCTCACATAGAAAGATACCCAAATCAAGACAATCACAAAAGGTCCAAAACCGTAATCCTTTGGGCAACCATTGGTGCCGGTATAGCTTCAATTTGCATTCTTGCATGTTTAGTTATGTTAATCATTTGTTTCTGCAAAAAGCGAAGAAATAAACAGACTGATACGAAGAACTCACCTGGTTGGCGGCCCTTGTTCCTCCATGGGTCTCTTATGAATAGCACTGCTAATGCTAAGTGTTCAATGGCGTTTCAAAACCCGAACGGGTCTGTGGGTCGGACCGGCAAACGCTTTACATTAGCAGAGATTAAAGCAGCAACAAATAATTTCGATGACAGTTTAATTATTGGAGTTGGAGGATTTGGTAAAGTATACAAAGGGGATCTTGAAGACGGTACTCTCGCTGCAATTAAACGGGCCAACCCACAATCGGAACAAGGCCTAGCTGAGTTCGAAACTGAGATTGAAATGCTCTCAAAGCTCAGGCATAGGCATCTAGTGTCTATGATTGGGTTTTGTCCCACTTTAGAGCACACGCATGTGAGCACCGCGGTAAAAGGGAGTTTCGGGTACCTTGATCCTGAGTACTTCAGGCGGCAGCAACTGACTGAGAAGTCCGATGTTTATTCATTCGGTGTGGTGTTGTTTGAGGTTGTTTGTGCCAGAGCGGTTATAAACCCTAGCTTGCCTCGGGATCAGATAAATCTTGCTGAATGGGCGATGAGGTGGCAACATCAAAGATCACTCGAAACCATTATCGACCCTTTCCTTAAAGGGAAATACTCCTCAGAATCACTGATGAGATTTGGGGAAATAGCGGAGAAATGTCTGGCGGATGAGGGGAAGAGCCGGCCTACAATGGGGGAAGTTTTGTGGCACTTGGAGTATGTTTTACAAGTTCAAGAAGCTTGGCTAAGGCCCAAGAATGAAGATGGAGAGGCTTGTTTGGAAACAAGAACTGAAGATGAAGAGGGCTGTTTGGAAACAAGAATTGAAGAAGGCGCTTTAGCCGGATCTGCAGCAGAGCTGGCGGCTGAAAAACCGGGTGTTTTGGTTGTGGGAGTGGATGAATTTTCGCAGTTGGTTAACCAACAGGGAAGGTGA

Network for GWHGAAZE004385

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12819.8	Malectin_like	34	405	9.70E-35
PF00069.26	Pkinase	582	704	5.20E-08

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.040
	SRR3591706	second leaf	1.460
	SRR3591707	mature leaf	1.585
	SRR3591708	Shoot apex	4.337
	SRR3591709	Stem	7.140
	SRR3591710	White floral bud	2.932
	SRR3591711	White flower	2.759
	SRR3591712	Green floral bud	4.618
	SRR3591713	Yellow flower	0.273
SRP173429	SRR8316895	Juvenile bud stage	2.448
	SRR8316896	Juvenile bud stage	3.403
	SRR8316897	Juvenile bud stage	1.067
	SRR8316894	Third green stage	2.088
	SRR8316900	Third green stage	3.848
	SRR8316901	Third green stage	3.133
	SRR8316898	Complete white stage	1.012
	SRR8316899	Complete white stage	4.444
	SRR8316903	Complete white stage	1.830
	SRR8316902	Silver flowering stage	0.877
	SRR8316904	Silver flowering stage	1.624
	SRR8316905	Silver flowering stage	0.689
	SRR8316906	Gold flowering stage	1.334
	SRR8316907	Gold flowering stage	1.219
	SRR8316908	Gold flowering stage	1.388
SRP132670	SRR6706286	Control	5.370
	SRR6706287	Light intensity 50%	5.793
	SRR6706288	Light intensity 20%	5.619
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.598
	CNS0095593	Slightly white alabastrum(diploid) 2	3.289
	CNS0095594	Slightly white alabastrum(diploid) 3	2.480
	CNS0095595	Whole white alabastrum(diploid) 2	2.123
	CNS0095596	Whole white alabastrum(diploid) 3	1.239
	CNS0095597	Whole white alabastrum(diploid) 4	2.255
	CNS0095598	Silvery flower (diploied) 1	4.162
	CNS0095599	Silvery flower (diploied) 2	4.292
	CNS0095600	Silvery flower (diploied) 3	3.643
	CNS0095601	Golden flower (diploid) 1	4.169
	CNS0095602	Golden flower (diploid) 2	3.883
	CNS0095603	Golden flower (diploid) 3	3.772
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.369
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.666
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.776
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.691
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.087
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.029
	CNS0095610	Silvery flower (tetraploid) 1	2.410
	CNS0095611	Silvery flower (tetraploid) 2	2.645
	CNS0095612	Silvery flower (tetraploid) 3	2.597
	CNS0095613	Golden flower (tetraploid) 1	0.846
	CNS0095614	Golden flower (tetraploid) 2	1.338
	CNS0095615	Golden flower (tetraploid) 3	1.265
CRA001975	CRR073297	Stem 1	6.954
	CRR073298	Stem 2	7.185
	CRR073299	Stem 3	7.178
	CRR073300	Leaf 1	8.791
	CRR073301	Leaf 2	7.822
	CRR073302	Leaf 3	5.322
	CRR073303	Juvenile bud 1	5.609
	CRR073304	Juvenile bud 2	4.430
	CRR073305	Juvenile bud 3	6.266
	CRR073306	Third green 1	0.589
	CRR073307	Third green 2	0.906
	CRR073308	Third green 3	1.131
	CRR073309	Second white 1	0.378
	CRR073310	Second white 2	0.631
	CRR073311	Second white 3	0.130
	CRR073312	Silver flowering 1	0.226
	CRR073313	Silver flowering 2	0.566
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	4.975
	CRR073316	Gold flowering 2	8.652
	CRR073317	Gold flowering 3	4.719
	CRR073318	Tawny withering 1	6.685
	CRR073319	Tawny withering 2	3.840
	CRR073320	Tawny withering 3	6.131