Gene detail

Detail information of GWHGAAZE004390

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002281868.2	PREDICTED: homeobox-leucine zipper protein HOX32 [Vitis vinifera]
Swissprot	tr\|Q6AST1\|HOX32_ORYSJ	Homeobox-leucine zipper protein HOX32
trEMBL	tr\|A5AMZ1\|A5AMZ1_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN73584.1}
TAIR10	AT2G34710.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	116252450	116259362	+
GWHAAZE00000001	mRNA	116252450	116259362	+
GWHAAZE00000001	exon	116252450	116252688	+
GWHAAZE00000001	exon	116254381	116254540	+
GWHAAZE00000001	exon	116254808	116254920	+
GWHAAZE00000001	exon	116255044	116255134	+
GWHAAZE00000001	exon	116255238	116255333	+
GWHAAZE00000001	exon	116255410	116255523	+
GWHAAZE00000001	exon	116255641	116255724	+
GWHAAZE00000001	exon	116255857	116256012	+
GWHAAZE00000001	exon	116256101	116256175	+
GWHAAZE00000001	exon	116256263	116256369	+
GWHAAZE00000001	exon	116256485	116256689	+
GWHAAZE00000001	exon	116256769	116256957	+
GWHAAZE00000001	exon	116257068	116257148	+
GWHAAZE00000001	exon	116257266	116257400	+
GWHAAZE00000001	exon	116257531	116257850	+
GWHAAZE00000001	exon	116258033	116258144	+
GWHAAZE00000001	exon	116258270	116258419	+
GWHAAZE00000001	exon	116259216	116259362	+
GWHAAZE00000001	CDS	116252450	116252688	+
GWHAAZE00000001	CDS	116254381	116254540	+
GWHAAZE00000001	CDS	116254808	116254920	+
GWHAAZE00000001	CDS	116255044	116255134	+
GWHAAZE00000001	CDS	116255238	116255333	+
GWHAAZE00000001	CDS	116255410	116255523	+
GWHAAZE00000001	CDS	116255641	116255724	+
GWHAAZE00000001	CDS	116255857	116256012	+
GWHAAZE00000001	CDS	116256101	116256175	+
GWHAAZE00000001	CDS	116256263	116256369	+
GWHAAZE00000001	CDS	116256485	116256689	+
GWHAAZE00000001	CDS	116256769	116256957	+
GWHAAZE00000001	CDS	116257068	116257148	+
GWHAAZE00000001	CDS	116257266	116257400	+
GWHAAZE00000001	CDS	116257531	116257850	+
GWHAAZE00000001	CDS	116258033	116258144	+
GWHAAZE00000001	CDS	116258270	116258419	+
GWHAAZE00000001	CDS	116259216	116259362	+

Transcript Sequence
>GWHTAAZE004396 ATGGCGCTTTCTATGCAAAGAGAGACATTTGGTGGTGGTAATAATAACAAACAGCTGCAACAACAGATGGATTCGAGCAAGTATGTGAGGTATACGCCTGAGCAGGTTGAGGCCTTGGAGAGGGTTTATACTGAATGCCCCAAACCCAGTTCTCTTAGAAGGCAACAGCTTATTAGAGAGTGCCCTATTCTCTCTAATATTGAGCCTAAACAGATCAAAGTTTGGTTTCAGAATCGCAGATGCCGTGAGAAGCAAAGAAAAGAAGCTTCACGTCTCCAGACTGTAAACAGAAAGCTGAATGCCATGAACAAGCTGTTGATGGAAGAAAATGACCGCTTACAGAAGCAAGTCTCTCATTTGGTGTACGAAAATGGATTTATGCGTCAACAACTGCATACTGTACCTGCAACGACCACAGACACTAGCTGTGAGTCCGTGGTCATGAGTGGTCAGCAACAACAGCAAAACCCAACACCTCCGCATCCGCAAAGGGATGCTAACAACCCAGCTGGACTTCTTGCAATTGCCGAGGAGTCCCTGGCAGAGTTCCTTTCCAAGGCTACCGGGACTGCTGTCGACTGGGTGCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGCATCGTTGCTGTTTCCCGCAACTGTAGTGGGGTAGCAGCACGAGCCTGCGGTCTTGTGAGTTTAGAACCCATGAAGGTCGCCGAAATCCTCAAAGATCGTCCATCTTGGTTTCGTGACTGCCGTTGCCTCGATGTACTCAATGTAATCCCTACTGGAAACGGAGGGACAATCGAGCTCATATACATGCAGACCTATGCTCCAACTACATTGGCATCGGCCCGGGACTATTGGACTCTAAGATATACTACAAGCTTGGAAGATGGCAGTCTTGTGATATGTGAGAGGTCTTTGACCCCCACTACTGGTGGTCCTCCGGGGCCTCCTGCCACTTGTTTTGTTAGAGCTGAAATGCTACCCAGTGGTTATCTGATACGGCCTTGTGATGGTGGTGGATCAATCATTAACATTGTTGATCACATCGACTTGGACGCTTGGAGTGTTCCTGAGGTTCTAAGGCCACTGTACGAGTCATCAAAAATTCTTGCCCAGAAAACAACTATGGCTGCCTTGCGGCACATACGACAAATCGCACAAGAAACAAGTGGCGAAATTCAGTACAGCGGGGGCCGCCAACCTGCTGTTTTGAGGACTTTTAGTCAGAGACTCTGCAGGGGGTTCAATGATGCTGTCAATGGGTTTCTTGATGATGGTTGGTCCATCATGGGTAGTGATGGCGGTGAGGATGTTACCATTGCCATAAATTCGTCCCCGAACAAGTTTCTCGGGTCTCAATATAACACATTGTCAATGCTTCCATCTTTTGGTGGTGTTCTTTGTGCCAAGGCATCAATGCTTCTTCAGGCACGTCCTATAATTAATGTACCGCCAGCTTTGCTTGTTCGCTTCTTGAGAGAGCACCGTTCCGAGTGGGCTGACTATGGGATCGATGCTTACTCTGCTGCGTCTCTTAAAGCTAGTCCTTATGCAGTTCCTTGTGCAAGACCTGGTGGGTTCCCTAGTACCCAGGTCATCTTACCTTTAGCCCATACTGTGGAGCATGAGGAGTTTTTGGAAGTGGTTCGGTTGGAGGGTCATGCATTTTCTCCCGAGGACGTAGCATTGTCCCGAGATATGTACTTATTACAGTTATGCAGTGGAGTTGATGAAAATGCAGCTGGCGCCTGTGCTCAGCTTGTTTTTGCTCCTATTGATGAATCTTGTGCTGATGATGCTCCTTTGCTGCCCTCTGGTTTCCGTGTTATACCTTTGGATCCTAAATCGGATGGGCCTAATGCAACTCGAACCTTGGATTTGGCATCTACGCTTGAAGTGGGACCCGGTGGAGCACGTCCACCTGGTGAGGCCGATGGATATGACCTTAGGTCCGTTCTGACTATTGCGTTCCAGTTCACTTTTGAAAACCACTTTAGGGACAATGTGGCTGCTATGGCTCGCCAGTATGTTCGTAGTGTTGTGGGGTCTGTTCAGAGGGTTGCCATGGCCATTGCTCCCTCTCGGCTTAGCTCCCAGCTGACACCAAAACCACTGCCCGGTTCTCCTGAGGCTCTTACTTTGGCACGATGGATTTCGAGGAGCTACAGGATCCACACCGGGGCGGAGCTCCTTCAGGTTGACTCTCAAGCATCTGATGCTGTCTTGAAAAATCTTTGGAACCATTCAGATGCAATAATGTGCTGCTCTGTGAAGTCAAATGCGTCTCCCATTTTCACCTTTGCAAACCAGGCTGGCCTAGACATGCTTGAAACTACTCTAGTGGCCCTCCAGGATATAATGCTCGACAAGATTCTTGACGAAGCTGGTCGAAAGATTCTTCTCTCGGAGTTCTCCAAAATCATGCAGCAGGGCTTTGCTTATCTGCCAGCCGGGATATGTGTGTCGAGCATGGGGAGGCCTGTTTCTTACGAGCAAGCAATTGCATGGAAGGTTCTTAACGACGATGATTCAAGCCACTGCTTAGCATTCATGTTCATCAACTGGTCTTTCGTGTAA

Network for GWHGAAZE004390

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.30	Homeodomain	27	85	3.00E-16
PF01852.20	START	175	382	1.70E-51
PF08670.12	MEKHLA	712	856	2.30E-49

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-HD-ZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008289	molecular_function	lipid binding
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	144.832
	SRR3591706	second leaf	26.730
	SRR3591707	mature leaf	10.089
	SRR3591708	Shoot apex	76.534
	SRR3591709	Stem	84.602
	SRR3591710	White floral bud	6.500
	SRR3591711	White flower	2.573
	SRR3591712	Green floral bud	10.454
	SRR3591713	Yellow flower	0.369
SRP173429	SRR8316895	Juvenile bud stage	7.891
	SRR8316896	Juvenile bud stage	8.023
	SRR8316897	Juvenile bud stage	2.431
	SRR8316894	Third green stage	4.226
	SRR8316900	Third green stage	5.536
	SRR8316901	Third green stage	4.406
	SRR8316898	Complete white stage	0.279
	SRR8316899	Complete white stage	4.522
	SRR8316903	Complete white stage	1.080
	SRR8316902	Silver flowering stage	0.142
	SRR8316904	Silver flowering stage	0.144
	SRR8316905	Silver flowering stage	0.092
	SRR8316906	Gold flowering stage	0.043
	SRR8316907	Gold flowering stage	0.628
	SRR8316908	Gold flowering stage	0.039
SRP132670	SRR6706286	Control	5.262
	SRR6706287	Light intensity 50%	5.503
	SRR6706288	Light intensity 20%	5.780
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.659
	CNS0095593	Slightly white alabastrum(diploid) 2	6.742
	CNS0095594	Slightly white alabastrum(diploid) 3	6.287
	CNS0095595	Whole white alabastrum(diploid) 2	3.806
	CNS0095596	Whole white alabastrum(diploid) 3	2.901
	CNS0095597	Whole white alabastrum(diploid) 4	2.461
	CNS0095598	Silvery flower (diploied) 1	5.881
	CNS0095599	Silvery flower (diploied) 2	3.912
	CNS0095600	Silvery flower (diploied) 3	1.989
	CNS0095601	Golden flower (diploid) 1	2.765
	CNS0095602	Golden flower (diploid) 2	2.695
	CNS0095603	Golden flower (diploid) 3	2.640
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.069
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.556
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.354
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.978
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.031
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.433
	CNS0095610	Silvery flower (tetraploid) 1	0.952
	CNS0095611	Silvery flower (tetraploid) 2	2.595
	CNS0095612	Silvery flower (tetraploid) 3	1.665
	CNS0095613	Golden flower (tetraploid) 1	0.166
	CNS0095614	Golden flower (tetraploid) 2	0.427
	CNS0095615	Golden flower (tetraploid) 3	0.079
CRA001975	CRR073297	Stem 1	19.767
	CRR073298	Stem 2	16.074
	CRR073299	Stem 3	28.562
	CRR073300	Leaf 1	6.037
	CRR073301	Leaf 2	9.180
	CRR073302	Leaf 3	6.196
	CRR073303	Juvenile bud 1	4.517
	CRR073304	Juvenile bud 2	1.042
	CRR073305	Juvenile bud 3	6.006
	CRR073306	Third green 1	0.080
	CRR073307	Third green 2	0.106
	CRR073308	Third green 3	0.098
	CRR073309	Second white 1	0.021
	CRR073310	Second white 2	0.106
	CRR073311	Second white 3	0.044
	CRR073312	Silver flowering 1	0.002
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.025
	CRR073315	Gold flowering 1	4.357
	CRR073316	Gold flowering 2	6.216
	CRR073317	Gold flowering 3	5.296
	CRR073318	Tawny withering 1	125.678
	CRR073319	Tawny withering 2	54.758
	CRR073320	Tawny withering 3	151.464