Gene detail

Detail information of GWHGAAZE004393

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002281628.1	0	PREDICTED: U3 small nucleolar RNA-interacting protein 2 [Vitis vinifera]
COG	YP_007115634.1	2E-23	WD-40 repeat-containing protein
Swissprot	tr\|Q9FLX9\|NLE1_ARATH	1E-18	Notchless protein homolog
trEMBL	tr\|D7TKH3\|D7TKH3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI30995.3}
TAIR10	AT4G21130.1	5E-106	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	116289971	116298269	+
GWHAAZE00000001	mRNA	116289971	116298269	+
GWHAAZE00000001	exon	116289971	116290482	+
GWHAAZE00000001	exon	116292375	116292711	+
GWHAAZE00000001	exon	116293265	116293489	+
GWHAAZE00000001	exon	116294162	116294387	+
GWHAAZE00000001	exon	116294519	116294829	+
GWHAAZE00000001	exon	116296950	116297015	+
GWHAAZE00000001	exon	116297876	116298269	+
GWHAAZE00000001	CDS	116289971	116290482	+
GWHAAZE00000001	CDS	116292375	116292711	+
GWHAAZE00000001	CDS	116293265	116293489	+
GWHAAZE00000001	CDS	116294162	116294387	+
GWHAAZE00000001	CDS	116294519	116294829	+
GWHAAZE00000001	CDS	116296950	116297015	+
GWHAAZE00000001	CDS	116297876	116297953	+
GWHAAZE00000001	three_prime_UTR	116297954	116298269	+

Transcript Sequence
>GWHTAAZE004399 ACTGCATTCTCCCTCCGTATTACACACACACATACATATATATATATATATTGATACTGTTTAATCATGAAGAACAAAAACATTAATAAGAAGAAAATATCATCTCAAAATGGAACTAACAAGGGAAAGAAAAGGTTTTCAATCGACCACGATCCATTCTTCGACGCTGGATCGAAAAGGAGAAGAAATCTCGAAGACGACGAGAACATAGAGAGCAGCGACGGAGAGTCTGAAGAATTCGACGATGAATTTTCCGGCGGAGAAGCGGCTGAGGAGGTGGCGGAATTCGAGGAGGAAACTCCGGCAGAGAAAAGGAAGAGACTCGCGGACGCGTATGTGGAGAAATTAAGAGCGACTGCTAAAAGGCAACAAAAGGAAAAGGAAGAGGAAGGGGAAGAGGAGATCGGCGATGAGAGAGTGAAAGAAGGTGAGAGGGATAATCTCGTTGGAAATCTTTTGCTGCAAGAGCAGCTTGAAGCTAGTGGCCGCGTTCAGAGATTGATTGCTTCTAGGGTTCAGAAGCCAATTGATGGATTTCGGGTTTTAGTAAAACACCGGCAGTCTGTTACTTCTGTAGCTTTATCTGAAGATGACGTGAAGGGATTTTCAGCTTCCAAGGATGGTACCATCGTACATTGGGATGTAGATAGTGGGAAGAGTGAAAGATATAATTGGCCTAGCGAAGAAGTACTAAAATCCCATGGTGCAAAGGACCCACAAGGCCGAGCAACAAAGCACAGTAAACATGTGTCAGCGTTGGCTGTTAGCTCTGATGGTCGGTATTTGGCAAGTGGAGGCTTTGATCGTCATATTCATTTATGGGATATTCGTACACGAGAACATATTCAGGCTTTTCCAGGCCACAAAGGACCTGTATCATGTTTGACTTTTAGACAAGGGACTTCAGAACTATTTTCTGGTTCTGTTGACCGAACAATCAAGGTGTGGAATGCTGAAGACAGGTCTTACATAACCACATTATTTGGTCACCAAAGTGAAGTGTTGACTATTGACAGTCTGAGGAAAGAACGGGTGTTAACTGTTGGACGTGATCGAACTATGCACTTGTGGAAAGTCCCTGAGGAGTCACAATTGGTATTTCGTGCTCCGAAGTCATCCCTGGAGTGCTGCTGTTTTATTAGTAATGATGAATTCTTATCGGGTTCAGATGATGGAAGTATTGAGCAATGGACTGTACTGCGAAAGAAGCCAATTCACATTGTCAAAAATGCTCATGCAATGTTGAGTCCAAACAAGTTGGAACAATTAGGAAATGAAGGATTATTAAATGGGCATCAAGCAGAAAAGGTTCAGAATAGCCTGAATAGGGAAGTGGCTCTTGTATTTTTACTGTATTGTCTTGAGAGAATTAGCTGTAATCTTTTAACTTTTTTTGGCTCCCTTTGTATTACCATTCTCACACATTCTAACGATAATGTTATTTCAGATGGGCCTGAAAATTTATGTTTGTCAGTGCATTCCTGGGTTGGTTCGGTCTCTGTATGTAGAAGCAGTGATCTTGCTGCTTCAGGAGCTGGTAATGGTTCAGTTCGTCTTTGGGGAATTGAAAGCGAGTCCAAAGGCATTCGGCCCTTGTTTGAACTCCCGTTGGTTGGGTTTGTAAATTCCTTGGCATTTGCAAAATCAGGAGCGTTCCTGATTGCTGGAGTTGGGCAGGAACCACGGATGGGGAGGTGGGGACGTGTTCCTGATGCTCAGAATGGAGTTGCTCTGCATTCGTTGAAGCTCTCATGAAACGGAGCACTTTTTTAAGCTCTTAAAATTTTGACACTCCCTGTAAAGGATCATGAAGCACTGTTTTGTCAATTATGTCCCGTATCTACTGCCTAGCAAATTTTGCTTTGCTTTGTTAATCTTATTATTTATCCAGTTTAAGAAAGAAAAAATTCAGGCGTGGAGATAGTCATAGTTCTTCTATAAACTTAAGTGCACAGGCTGGTGACTAGAGAGTTTGATTCACATCTTAAAACCAGTGGCTCAAAGTGGGGATGGGAAATGTTGTGTTCTTTCGTGCACGAGTTATTGAGGATGTATTTTTTGAATTCAAAAC

Network for GWHGAAZE004393

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	244	274	2.00E-06
PF00400.33	WD40	280	316	1.50E-05
PF00400.33	WD40	363	396	0.02
PF00400.33	WD40	489	519	0.069

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.005
	SRR3591706	second leaf	5.185
	SRR3591707	mature leaf	4.109
	SRR3591708	Shoot apex	13.380
	SRR3591709	Stem	8.260
	SRR3591710	White floral bud	6.288
	SRR3591711	White flower	11.685
	SRR3591712	Green floral bud	10.930
	SRR3591713	Yellow flower	6.922
SRP173429	SRR8316895	Juvenile bud stage	7.849
	SRR8316896	Juvenile bud stage	11.939
	SRR8316897	Juvenile bud stage	6.289
	SRR8316894	Third green stage	4.750
	SRR8316900	Third green stage	12.189
	SRR8316901	Third green stage	11.090
	SRR8316898	Complete white stage	1.107
	SRR8316899	Complete white stage	9.179
	SRR8316903	Complete white stage	2.616
	SRR8316902	Silver flowering stage	2.287
	SRR8316904	Silver flowering stage	2.759
	SRR8316905	Silver flowering stage	0.894
	SRR8316906	Gold flowering stage	4.886
	SRR8316907	Gold flowering stage	5.364
	SRR8316908	Gold flowering stage	6.011
SRP132670	SRR6706286	Control	10.425
	SRR6706287	Light intensity 50%	9.998
	SRR6706288	Light intensity 20%	10.658
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.531
	CNS0095593	Slightly white alabastrum(diploid) 2	10.569
	CNS0095594	Slightly white alabastrum(diploid) 3	6.860
	CNS0095595	Whole white alabastrum(diploid) 2	6.929
	CNS0095596	Whole white alabastrum(diploid) 3	6.589
	CNS0095597	Whole white alabastrum(diploid) 4	4.421
	CNS0095598	Silvery flower (diploied) 1	7.800
	CNS0095599	Silvery flower (diploied) 2	5.932
	CNS0095600	Silvery flower (diploied) 3	4.181
	CNS0095601	Golden flower (diploid) 1	3.413
	CNS0095602	Golden flower (diploid) 2	3.366
	CNS0095603	Golden flower (diploid) 3	3.785
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.669
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.734
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.723
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.694
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.813
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.525
	CNS0095610	Silvery flower (tetraploid) 1	7.221
	CNS0095611	Silvery flower (tetraploid) 2	5.925
	CNS0095612	Silvery flower (tetraploid) 3	4.092
	CNS0095613	Golden flower (tetraploid) 1	3.756
	CNS0095614	Golden flower (tetraploid) 2	5.749
	CNS0095615	Golden flower (tetraploid) 3	1.613
CRA001975	CRR073297	Stem 1	11.909
	CRR073298	Stem 2	7.435
	CRR073299	Stem 3	7.541
	CRR073300	Leaf 1	7.875
	CRR073301	Leaf 2	9.498
	CRR073302	Leaf 3	7.137
	CRR073303	Juvenile bud 1	6.203
	CRR073304	Juvenile bud 2	1.993
	CRR073305	Juvenile bud 3	7.128
	CRR073306	Third green 1	0.113
	CRR073307	Third green 2	0.445
	CRR073308	Third green 3	0.640
	CRR073309	Second white 1	0.791
	CRR073310	Second white 2	2.119
	CRR073311	Second white 3	1.806
	CRR073312	Silver flowering 1	1.079
	CRR073313	Silver flowering 2	0.388
	CRR073314	Silver flowering 3	0.606
	CRR073315	Gold flowering 1	2.702
	CRR073316	Gold flowering 2	5.766
	CRR073317	Gold flowering 3	1.811
	CRR073318	Tawny withering 1	8.867
	CRR073319	Tawny withering 2	7.986
	CRR073320	Tawny withering 3	12.093