Detail information of GWHGAAZE004405


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010664451.10PREDICTED: uncharacterized protein LOC100266091 isoform X1 [Vitis vinifera]
trEMBLtr|A0A067KZC7|A0A067KZC7_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP41537.1}
TAIR10AT1G27595.10Without detailed annotation

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene116485133116508935+
GWHAAZE00000001mRNA116485133116508935+
GWHAAZE00000001exon116485133116485269+
GWHAAZE00000001exon116487138116487354+
GWHAAZE00000001exon116488441116488600+
GWHAAZE00000001exon116489321116489413+
GWHAAZE00000001exon116491705116491807+
GWHAAZE00000001exon116491954116492128+
GWHAAZE00000001exon116495142116495316+
GWHAAZE00000001exon116495474116495638+
GWHAAZE00000001exon116495997116496587+
GWHAAZE00000001exon116496730116497371+
GWHAAZE00000001exon116501652116501765+
GWHAAZE00000001exon116501844116502083+
GWHAAZE00000001exon116502804116502851+
GWHAAZE00000001exon116503057116503203+
GWHAAZE00000001exon116504063116504227+
GWHAAZE00000001exon116504322116504384+
GWHAAZE00000001exon116504724116504834+
GWHAAZE00000001exon116504934116505017+
GWHAAZE00000001exon116505103116505150+
GWHAAZE00000001exon116505300116505374+
GWHAAZE00000001exon116506771116506851+
GWHAAZE00000001exon116506929116507000+
GWHAAZE00000001exon116507460116507504+
GWHAAZE00000001exon116507602116507685+
GWHAAZE00000001exon116507767116507870+
GWHAAZE00000001exon116508818116508935+
GWHAAZE00000001five_prime_UTR116485133116485269+
GWHAAZE00000001five_prime_UTR116487138116487151+
GWHAAZE00000001CDS116487152116487354+
GWHAAZE00000001CDS116488441116488600+
GWHAAZE00000001CDS116489321116489413+
GWHAAZE00000001CDS116491705116491807+
GWHAAZE00000001CDS116491954116492128+
GWHAAZE00000001CDS116495142116495316+
GWHAAZE00000001CDS116495474116495638+
GWHAAZE00000001CDS116495997116496587+
GWHAAZE00000001CDS116496730116497371+
GWHAAZE00000001CDS116501652116501765+
GWHAAZE00000001CDS116501844116502083+
GWHAAZE00000001CDS116502804116502851+
GWHAAZE00000001CDS116503057116503203+
GWHAAZE00000001CDS116504063116504227+
GWHAAZE00000001CDS116504322116504384+
GWHAAZE00000001CDS116504724116504834+
GWHAAZE00000001CDS116504934116505017+
GWHAAZE00000001CDS116505103116505150+
GWHAAZE00000001CDS116505300116505374+
GWHAAZE00000001CDS116506771116506851+
GWHAAZE00000001CDS116506929116507000+
GWHAAZE00000001CDS116507460116507504+
GWHAAZE00000001CDS116507602116507685+
GWHAAZE00000001CDS116507767116507870+
GWHAAZE00000001CDS116508818116508935+
Transcript Sequence

Network for GWHGAAZE004405

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF11935.9DUF3453963183.40E-46
PF12295.9Symplekin_C113412401.40E-41
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06100SYMPK mRNA surveillance pathway map03015
Tight junctionmap04530

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf23.181
SRR3591706second leaf18.805
SRR3591707mature leaf13.932
SRR3591708Shoot apex26.491
SRR3591709Stem20.329
SRR3591710White floral bud21.037
SRR3591711White flower25.039
SRR3591712Green floral bud20.565
SRR3591713Yellow flower20.874
SRP173429 SRR8316895Juvenile bud stage 11.768
SRR8316896Juvenile bud stage 14.804
SRR8316897Juvenile bud stage 8.097
SRR8316894Third green stage 7.963
SRR8316900Third green stage 17.563
SRR8316901Third green stage 17.513
SRR8316898Complete white stage 5.636
SRR8316899Complete white stage 21.108
SRR8316903Complete white stage 14.910
SRR8316902Silver flowering stage7.453
SRR8316904Silver flowering stage12.300
SRR8316905Silver flowering stage5.275
SRR8316906Gold flowering stage 14.606
SRR8316907Gold flowering stage 16.432
SRR8316908Gold flowering stage 16.311
SRP132670SRR6706286Control19.090
SRR6706287Light intensity 50%18.642
SRR6706288Light intensity 20%20.136
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.973
CNS0095593Slightly white alabastrum(diploid) 28.891
CNS0095594Slightly white alabastrum(diploid) 36.918
CNS0095595Whole white alabastrum(diploid) 28.176
CNS0095596Whole white alabastrum(diploid) 36.763
CNS0095597Whole white alabastrum(diploid) 46.758
CNS0095598Silvery flower (diploied) 112.350
CNS0095599Silvery flower (diploied) 210.399
CNS0095600Silvery flower (diploied) 319.456
CNS0095601Golden flower (diploid) 110.906
CNS0095602Golden flower (diploid) 218.075
CNS0095603Golden flower (diploid) 317.579
CNS0095604Slightly white alabastrum(tetraploid) 112.072
CNS0095605Slightly white alabastrum(tetraploid) 28.150
CNS0095606Slightly white alabastrum(tetraploid) 322.272
CNS0095607Whole white alabastrum(tetraploid) 17.115
CNS0095608Whole white alabastrum(tetraploid) 26.302
CNS0095609Whole white alabastrum(tetraploid) 316.120
CNS0095610Silvery flower (tetraploid) 121.716
CNS0095611Silvery flower (tetraploid) 219.062
CNS0095612Silvery flower (tetraploid) 319.688
CNS0095613Golden flower (tetraploid) 19.359
CNS0095614Golden flower (tetraploid) 217.166
CNS0095615Golden flower (tetraploid) 320.621
CRA001975CRR073297Stem 123.760
CRR073298Stem 222.247
CRR073299Stem 312.837
CRR073300Leaf 122.371
CRR073301Leaf 220.044
CRR073302Leaf 310.758
CRR073303Juvenile bud 111.729
CRR073304Juvenile bud 28.160
CRR073305Juvenile bud 315.726
CRR073306Third green 15.211
CRR073307Third green 24.984
CRR073308Third green 36.838
CRR073309Second white 16.568
CRR073310Second white 27.592
CRR073311Second white 38.140
CRR073312Silver flowering 19.982
CRR073313Silver flowering 211.600
CRR073314Silver flowering 38.675
CRR073315Gold flowering 14.349
CRR073316Gold flowering 28.996
CRR073317Gold flowering 35.984
CRR073318Tawny withering 111.529
CRR073319Tawny withering 212.036
CRR073320Tawny withering 310.987