Gene detail

Detail information of GWHGAAZE004439

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002271644.2	0	PREDICTED: endoplasmic reticulum oxidoreductin-1-like [Vitis vinifera]
Swissprot	tr\|Q9C7S7\|ERO1_ARATH	0	Endoplasmic reticulum oxidoreductin-1 (Precursor)
trEMBL	tr\|F6HLT8\|F6HLT8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55812.1}
TAIR10	AT1G72280.1	2E-165	endoplasmic reticulum oxidoreductins 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	117025430	117031435	-
GWHAAZE00000001	mRNA	117025430	117031435	-
GWHAAZE00000001	exon	117025430	117025615	-
GWHAAZE00000001	exon	117026054	117026177	-
GWHAAZE00000001	exon	117026485	117026687	-
GWHAAZE00000001	exon	117026768	117026872	-
GWHAAZE00000001	exon	117027002	117027120	-
GWHAAZE00000001	exon	117027544	117027654	-
GWHAAZE00000001	exon	117028229	117028487	-
GWHAAZE00000001	exon	117030514	117030645	-
GWHAAZE00000001	exon	117031274	117031435	-
GWHAAZE00000001	CDS	117031274	117031435	-
GWHAAZE00000001	CDS	117030514	117030645	-
GWHAAZE00000001	CDS	117028229	117028487	-
GWHAAZE00000001	CDS	117027544	117027654	-
GWHAAZE00000001	CDS	117027002	117027120	-
GWHAAZE00000001	CDS	117026768	117026872	-
GWHAAZE00000001	CDS	117026485	117026687	-
GWHAAZE00000001	CDS	117026054	117026177	-
GWHAAZE00000001	CDS	117025430	117025615	-

Transcript Sequence
>GWHTAAZE004445 ATGACGAAACCTGAAATTATTCATCAGAATAGGCATAGATTTCCATGGACATGGGCCATTGGTGCTCTAATAACTGTCTTTTTCGCTGCTGCACTCACCTCGAGGAACTTCCCGACTGTCTTTCTCTTCGGTCGTACTAATAAACTTTGCCAATGTGCGCAGGACAAATGTGAATATAGTGGAATGGTGGAGGACTATTGTTGTGATTATGAGATTGTAGATCATCTTAACGAGGAAGTGTTGCATCCACTGCTCCAAGATCTTACTAAAACCCCGTTTTTCCGCTACTTTAAGGTCAAGTTATGGTGTGATTGCCCGTTTTGGCTAGACGACGGTATGTGTCACTTGCGGGATTGCAGCGTATGTGAGTGTCCGGAAAATGAGTTCCCTGAACCATTTAAGAAGCCTCTCAGTCATCGGCTTTCATCAAAAGAACTTGTATGTCAAGAGAGAAAACCAGAGGCTGCTGTTGTCCGTACGATAGATATTAAAGCTTTTAGAGGGTGGACTGAAATTGACAATCCATGGACAGCTGATGATGAGACTGATAATGCTGAGATGACATATGTAAATCTTCAACTGAACCCTGAACGTTATACTGGCTATACTGGTCCACCTGCTCGACGGATATGGGATGCTATTTACACTGAAAACTGTCCCAAATATCCGTCCGAAGAGTTTTGTCGAGAGAAAATAATATTGTACAAACTGATATCCGGTCTTCACTCTTCCATATCGATTCACATAGCTGCTGATTATCTACTTGATGAAGCAACAAACTCGTGGGGTCAAAATCTGACATTGTTGTATGATCGGGTCTTGAAATATCCATATCGTGTTAGAAATTTGTACTTCACTTTTCTATTCGTTCTTCGAGCCGTGACAAAGGCTGCAGATTACTTGGAGCAGGCCGAGTATGAAACTGGAAACCCCGAGGAAGACCTGAAAACACAATCTTTGATGAGGCAACTACTCCACAATCCCAAACTGCGATCTGCATGCCCACTCCCATTTGACGAAGCTAAGCTATGGAAAGGCCAAAGTGGACCTCAACTGATTCAGCAAATACAAAGACAATTCAAAAACATTAGTGCCTTAATGGACTGTGTAGGATGTGAAAAATGCCGTCTTTGGGGAAAGCTTCAGGTTCTGGGTCTTGGCACTGCTCTAAAAATCCTCTTCTCTATTGATGGTCAGGAGCGCTTGGGTCAGAATCTGCAGCTGCAACGGAATGAAGTTATTGCTCTTATGAACCTACTGAATCGACTCTCGGAATCCGTATTGTTTGTTCATAAGATGGGGCCATCGGCTGAAAGAGTTGTAGGGAAGCAGATTTCTGCACCTAGCTATCAAAGTAACCTGTGGCGGAGGATATGGATGTCAATGGTGGGCCATTGGTGA

Network for GWHGAAZE004439

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04137.16	ERO1	81	429	1.10E-120

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10950	ERO1L	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005783	cellular_component	endoplasmic reticulum
GO:0003756	molecular_function	protein disulfide isomerase activity
GO:0016671	molecular_function	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.025
	SRR3591706	second leaf	5.582
	SRR3591707	mature leaf	3.811
	SRR3591708	Shoot apex	7.163
	SRR3591709	Stem	4.647
	SRR3591710	White floral bud	3.520
	SRR3591711	White flower	3.540
	SRR3591712	Green floral bud	5.807
	SRR3591713	Yellow flower	4.001
SRP173429	SRR8316895	Juvenile bud stage	4.703
	SRR8316896	Juvenile bud stage	6.883
	SRR8316897	Juvenile bud stage	4.111
	SRR8316894	Third green stage	1.517
	SRR8316900	Third green stage	6.345
	SRR8316901	Third green stage	5.329
	SRR8316898	Complete white stage	1.522
	SRR8316899	Complete white stage	5.691
	SRR8316903	Complete white stage	2.014
	SRR8316902	Silver flowering stage	1.468
	SRR8316904	Silver flowering stage	2.271
	SRR8316905	Silver flowering stage	0.694
	SRR8316906	Gold flowering stage	3.923
	SRR8316907	Gold flowering stage	2.510
	SRR8316908	Gold flowering stage	3.709
SRP132670	SRR6706286	Control	4.105
	SRR6706287	Light intensity 50%	4.220
	SRR6706288	Light intensity 20%	4.987
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.238
	CNS0095593	Slightly white alabastrum(diploid) 2	5.102
	CNS0095594	Slightly white alabastrum(diploid) 3	4.355
	CNS0095595	Whole white alabastrum(diploid) 2	3.959
	CNS0095596	Whole white alabastrum(diploid) 3	3.163
	CNS0095597	Whole white alabastrum(diploid) 4	3.469
	CNS0095598	Silvery flower (diploied) 1	5.877
	CNS0095599	Silvery flower (diploied) 2	5.896
	CNS0095600	Silvery flower (diploied) 3	4.120
	CNS0095601	Golden flower (diploid) 1	5.407
	CNS0095602	Golden flower (diploid) 2	4.691
	CNS0095603	Golden flower (diploid) 3	4.842
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.793
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.062
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.752
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.370
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.831
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.719
	CNS0095610	Silvery flower (tetraploid) 1	5.022
	CNS0095611	Silvery flower (tetraploid) 2	4.248
	CNS0095612	Silvery flower (tetraploid) 3	2.075
	CNS0095613	Golden flower (tetraploid) 1	2.653
	CNS0095614	Golden flower (tetraploid) 2	3.644
	CNS0095615	Golden flower (tetraploid) 3	1.261
CRA001975	CRR073297	Stem 1	6.398
	CRR073298	Stem 2	5.187
	CRR073299	Stem 3	5.442
	CRR073300	Leaf 1	5.265
	CRR073301	Leaf 2	5.394
	CRR073302	Leaf 3	5.863
	CRR073303	Juvenile bud 1	3.998
	CRR073304	Juvenile bud 2	3.144
	CRR073305	Juvenile bud 3	4.594
	CRR073306	Third green 1	0.374
	CRR073307	Third green 2	0.147
	CRR073308	Third green 3	0.817
	CRR073309	Second white 1	0.477
	CRR073310	Second white 2	0.504
	CRR073311	Second white 3	0.402
	CRR073312	Silver flowering 1	0.424
	CRR073313	Silver flowering 2	1.108
	CRR073314	Silver flowering 3	1.065
	CRR073315	Gold flowering 1	4.792
	CRR073316	Gold flowering 2	5.607
	CRR073317	Gold flowering 3	1.928
	CRR073318	Tawny withering 1	3.623
	CRR073319	Tawny withering 2	3.553
	CRR073320	Tawny withering 3	4.197