Gene detail

Detail information of GWHGAAZE004442

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AET97663.1	1.731E-134	TCP transcription factor [Camellia sinensis]
Swissprot	tr\|Q93V43\|TCP2_ARATH	6E-63	Transcription factor TCP2
trEMBL	tr\|J7F3K5\|J7F3K5_CAMSI	6E-135	TCP transcription factor {ECO:0000313\|EMBL:AET97663.1}
TAIR10	AT4G18390.2	3E-41	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	117115830	117117011	+
GWHAAZE00000001	mRNA	117115830	117117011	+
GWHAAZE00000001	exon	117115830	117116132	+
GWHAAZE00000001	exon	117116193	117116457	+
GWHAAZE00000001	exon	117116575	117117011	+
GWHAAZE00000001	CDS	117115830	117116132	+
GWHAAZE00000001	CDS	117116193	117116457	+
GWHAAZE00000001	CDS	117116575	117117011	+

Transcript Sequence
>GWHTAAZE004448 ATGTCTCGAATTGTTAGGGTTTCTCGGGCAACCGGCGGGAAAGATCGGCACAGCAAAGTCATGACCTCAAAAGGGCTAAGAGACCGTCGTGTAAGGCTCTCGGTCACCACTGCAATACAGTTCTACGATCTCCAAGATCGGCTCGGTTACGACCAACCCAGCAAGGCAGTAGAATGGTTGCTAAAGGCGGCGGCGAGCTCCATTGATGAGCTTCCTTCTCTCAACTCTTCGTTTCCGGATACTCCGAAGCAACTGAGCGACGAAAAGAGGTCCGGAGATCATCACGGGTTCGATTCTGTGGAGTCAACTTGTAGTAGCACTTCAGAGACGAGCAAGGGCTCGGGGTTATCACTTTCGCGGTCCGAAAGATCTGAAAACCGAGTGAAAGCCCGAGAGAGGGCGAGGGGAAGAGCAGCAGAGAAGGAGAGAGAAGGGATTGAAACCCCAAATGTGAATCATTTGTCCCAGAATTCGTCTTTCACTGAGCTTCTCACTGGTGGTATAAGCAGTGCTAATAATAATACCACCAGTCCTAATGGGTCATCTCATCATCATCAAAATACTCGTGGTCAAACCCACCTGGGAAATTCTCTCCCACAGCCATCTACGGTTTCAATGTTCAATGTCAATGGAGACCACCACCATCAGGAGCTGCAGCATTTCTCCTTTGTCCCAGACCATCTTGTCCAGACAACTGTAACTGCCGCCGGTGGGAGTGACTACAACCTCAACTTCTCCATCTCTTCTTCTTCGGGCCTTGCTGGTACTTTTAATAGGGGGACCCTTCAGTCCAATTCACCGTCTCTTTTACCTCATCATCTTCAGAGGTTTTCTCCCATTGACGGATCAAACATACCCTTCTTCATGGGGACTACTACAGCGCCTCCAAATGCTGCACCTGTGGAGAATCATCACCACTTCCTACCTGGATTCGACGGCCGCTTGCAGCTCTGCTACGGAGATGGTAACCGTCATCCTGATCAAAAGGGGAAAGAGAAGAACTGA

Network for GWHGAAZE004442

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03634.14	TCP	12	143	1.50E-39

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TCP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.719
	SRR3591706	second leaf	73.781
	SRR3591707	mature leaf	92.809
	SRR3591708	Shoot apex	64.105
	SRR3591709	Stem	1.230
	SRR3591710	White floral bud	17.409
	SRR3591711	White flower	20.203
	SRR3591712	Green floral bud	57.870
	SRR3591713	Yellow flower	11.191
SRP173429	SRR8316895	Juvenile bud stage	19.998
	SRR8316896	Juvenile bud stage	22.819
	SRR8316897	Juvenile bud stage	10.355
	SRR8316894	Third green stage	12.390
	SRR8316900	Third green stage	36.540
	SRR8316901	Third green stage	34.586
	SRR8316898	Complete white stage	3.423
	SRR8316899	Complete white stage	29.246
	SRR8316903	Complete white stage	5.125
	SRR8316902	Silver flowering stage	2.101
	SRR8316904	Silver flowering stage	1.849
	SRR8316905	Silver flowering stage	1.116
	SRR8316906	Gold flowering stage	6.277
	SRR8316907	Gold flowering stage	4.100
	SRR8316908	Gold flowering stage	7.047
SRP132670	SRR6706286	Control	38.501
	SRR6706287	Light intensity 50%	43.998
	SRR6706288	Light intensity 20%	53.477
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.647
	CNS0095593	Slightly white alabastrum(diploid) 2	9.990
	CNS0095594	Slightly white alabastrum(diploid) 3	11.547
	CNS0095595	Whole white alabastrum(diploid) 2	13.659
	CNS0095596	Whole white alabastrum(diploid) 3	13.330
	CNS0095597	Whole white alabastrum(diploid) 4	8.936
	CNS0095598	Silvery flower (diploied) 1	9.962
	CNS0095599	Silvery flower (diploied) 2	5.081
	CNS0095600	Silvery flower (diploied) 3	8.225
	CNS0095601	Golden flower (diploid) 1	5.744
	CNS0095602	Golden flower (diploid) 2	9.159
	CNS0095603	Golden flower (diploid) 3	10.305
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.581
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.179
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.591
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.404
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.979
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.276
	CNS0095610	Silvery flower (tetraploid) 1	10.129
	CNS0095611	Silvery flower (tetraploid) 2	9.308
	CNS0095612	Silvery flower (tetraploid) 3	4.183
	CNS0095613	Golden flower (tetraploid) 1	3.113
	CNS0095614	Golden flower (tetraploid) 2	12.040
	CNS0095615	Golden flower (tetraploid) 3	7.310
CRA001975	CRR073297	Stem 1	38.751
	CRR073298	Stem 2	35.794
	CRR073299	Stem 3	36.549
	CRR073300	Leaf 1	41.499
	CRR073301	Leaf 2	39.323
	CRR073302	Leaf 3	45.520
	CRR073303	Juvenile bud 1	30.524
	CRR073304	Juvenile bud 2	40.819
	CRR073305	Juvenile bud 3	25.106
	CRR073306	Third green 1	6.435
	CRR073307	Third green 2	3.867
	CRR073308	Third green 3	7.305
	CRR073309	Second white 1	2.564
	CRR073310	Second white 2	4.292
	CRR073311	Second white 3	1.915
	CRR073312	Silver flowering 1	2.199
	CRR073313	Silver flowering 2	1.872
	CRR073314	Silver flowering 3	2.727
	CRR073315	Gold flowering 1	47.239
	CRR073316	Gold flowering 2	64.750
	CRR073317	Gold flowering 3	55.179
	CRR073318	Tawny withering 1	5.496
	CRR073319	Tawny withering 2	4.070
	CRR073320	Tawny withering 3	8.999