Gene detail

Detail information of GWHGAAZE004460

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002269267.1	1.8307E-101	PREDICTED: probable WRKY transcription factor 65 [Vitis vinifera]
Swissprot	tr\|Q9LP56\|WRK65_ARATH	2E-75	Probable WRKY transcription factor 65
trEMBL	tr\|D7TJP4\|D7TJP4_VITVI	7E-102	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI30716.3}
TAIR10	AT1G29280.1	9E-53	WRKY DNA-binding protein 65

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	117528977	117530165	+
GWHAAZE00000001	mRNA	117528977	117530165	+
GWHAAZE00000001	exon	117528977	117529104	+
GWHAAZE00000001	exon	117529366	117529512	+
GWHAAZE00000001	exon	117529637	117530165	+
GWHAAZE00000001	CDS	117528977	117529104	+
GWHAAZE00000001	CDS	117529366	117529512	+
GWHAAZE00000001	CDS	117529637	117530165	+

Transcript Sequence
>GWHTAAZE004466 ATGAACCGCCAATTCAACAACAACCGCGCCTTTGCCACCGATCAAGAAGACTACGATAATTCGCCCGAAAATAGCGCAGACTTGAATGAGGCCAAGATGATCACTTCTACCTCCAGCAATAAAAAAAGGCGAAGTGCACAGAAAAGAGTGGTGTCAGTGCCAATCAGAGACGTAGAAGGATCACGCTTTAAGGGTGAGACGAGTGCCCCACCATCGGATTCTTGGGCTTGGAGGAAGTACGGTCAAAAACCCATCAAAGGCTCTCCTTATCCAAGGGGGTACTATAGGTGTAGTAGCTCAAAAGGATGCCCAGCAAGAAAACAAGTAGAGAGGAGTAGAGTGGACCCCACTATGCTAGTGGTGACATACTCTTGTGAGCACAACCACCCTTGGCCGGCTTCTAGAAACAACCACCGGACCACCACCGCCACCGCGGCCACCACTCCCGAAGAAGTCAAGATAGAACTCGAACACGAAAATCCGGAACTCTTCGAGAAAAAACCCGAAATAATCGAGCCAGAAGAAAAGAAATTCTCTAGTATCGAAGACAGATCACTTATTACTGACGAATTCGGGTGGTTTTCGGATCTAGAGTCTACGTCATCAACTTTGTTGGAGAGCCGACTATTGGGTGGAGATTCCGTCGAAGATGCCGACATGGCTATGATTTTTTCGATGAGAGAGGAAGACGAGTCTTTGTTTGCGGATCTCGAGGAGCTGCCGGAGTGTTCGGTAGTTTTTCGGAGAGTTGGAATGGAGAGAGAGGAGGAGCGCCGGCGGTGCAGGTTAGACACCCTGGCTTAA

Network for GWHGAAZE004460

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	73	130	2.90E-25

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.552
	SRR3591706	second leaf	1.112
	SRR3591707	mature leaf	3.447
	SRR3591708	Shoot apex	1.530
	SRR3591709	Stem	7.204
	SRR3591710	White floral bud	1.492
	SRR3591711	White flower	3.471
	SRR3591712	Green floral bud	1.042
	SRR3591713	Yellow flower	7.418
SRP173429	SRR8316895	Juvenile bud stage	2.398
	SRR8316896	Juvenile bud stage	1.383
	SRR8316897	Juvenile bud stage	1.218
	SRR8316894	Third green stage	0.569
	SRR8316900	Third green stage	0.659
	SRR8316901	Third green stage	1.425
	SRR8316898	Complete white stage	1.062
	SRR8316899	Complete white stage	3.513
	SRR8316903	Complete white stage	0.537
	SRR8316902	Silver flowering stage	0.367
	SRR8316904	Silver flowering stage	0.858
	SRR8316905	Silver flowering stage	0.342
	SRR8316906	Gold flowering stage	2.498
	SRR8316907	Gold flowering stage	1.998
	SRR8316908	Gold flowering stage	5.814
SRP132670	SRR6706286	Control	2.055
	SRR6706287	Light intensity 50%	1.181
	SRR6706288	Light intensity 20%	1.148
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.868
	CNS0095593	Slightly white alabastrum(diploid) 2	2.227
	CNS0095594	Slightly white alabastrum(diploid) 3	2.815
	CNS0095595	Whole white alabastrum(diploid) 2	1.440
	CNS0095596	Whole white alabastrum(diploid) 3	0.798
	CNS0095597	Whole white alabastrum(diploid) 4	1.209
	CNS0095598	Silvery flower (diploied) 1	1.629
	CNS0095599	Silvery flower (diploied) 2	2.722
	CNS0095600	Silvery flower (diploied) 3	1.477
	CNS0095601	Golden flower (diploid) 1	4.029
	CNS0095602	Golden flower (diploid) 2	3.602
	CNS0095603	Golden flower (diploid) 3	3.516
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.387
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.393
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.005
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.051
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.287
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.190
	CNS0095610	Silvery flower (tetraploid) 1	0.331
	CNS0095611	Silvery flower (tetraploid) 2	0.628
	CNS0095612	Silvery flower (tetraploid) 3	0.809
	CNS0095613	Golden flower (tetraploid) 1	1.428
	CNS0095614	Golden flower (tetraploid) 2	1.517
	CNS0095615	Golden flower (tetraploid) 3	0.395
CRA001975	CRR073297	Stem 1	4.760
	CRR073298	Stem 2	1.926
	CRR073299	Stem 3	2.675
	CRR073300	Leaf 1	1.864
	CRR073301	Leaf 2	3.803
	CRR073302	Leaf 3	1.897
	CRR073303	Juvenile bud 1	1.810
	CRR073304	Juvenile bud 2	3.427
	CRR073305	Juvenile bud 3	4.686
	CRR073306	Third green 1	1.848
	CRR073307	Third green 2	2.645
	CRR073308	Third green 3	1.283
	CRR073309	Second white 1	0.730
	CRR073310	Second white 2	2.184
	CRR073311	Second white 3	0.748
	CRR073312	Silver flowering 1	4.696
	CRR073313	Silver flowering 2	5.164
	CRR073314	Silver flowering 3	3.274
	CRR073315	Gold flowering 1	11.743
	CRR073316	Gold flowering 2	8.965
	CRR073317	Gold flowering 3	10.398
	CRR073318	Tawny withering 1	40.544
	CRR073319	Tawny withering 2	35.214
	CRR073320	Tawny withering 3	23.527