Detail information of GWHGAAZE004461


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002268815.18.675E-151PREDICTED: ras-related protein RABA1d [Vitis vinifera]
COGYP_008431664.12E-25hypothetical protein N186_01315
Swissprottr|Q9FK68|RAA1C_ARATH8E-141Ras-related protein RABA1c
trEMBLtr|B9S8C9|B9S8C9_RICCO1E-150Putative uncharacterized protein {ECO:0000313|EMBL:EEF40106.1}
TAIR10AT5G45750.14E-111RAB GTPase homolog A1C

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene117540264117547687-
GWHAAZE00000001mRNA117540264117547687-
GWHAAZE00000001exon117547467117547687-
GWHAAZE00000001exon117540264117540702-
GWHAAZE00000001CDS117547467117547687-
GWHAAZE00000001CDS117540264117540702-
Transcript Sequence

Network for GWHGAAZE004461

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.23Ras151751.60E-60
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07904RAB11A Endocytosis map04144
Pancreatic secretionmap04972
Vasopressin-regulated water reabsorptionmap04962
Endocrine and other factor-regulated calcium reabsorptionmap04961

Gene Ontology

GO term OntologyName
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf125.376
SRR3591706second leaf42.804
SRR3591707mature leaf25.717
SRR3591708Shoot apex90.277
SRR3591709Stem77.103
SRR3591710White floral bud56.870
SRR3591711White flower39.081
SRR3591712Green floral bud81.496
SRR3591713Yellow flower16.131
SRP173429 SRR8316895Juvenile bud stage 42.398
SRR8316896Juvenile bud stage 39.620
SRR8316897Juvenile bud stage 24.882
SRR8316894Third green stage 20.493
SRR8316900Third green stage 57.512
SRR8316901Third green stage 49.497
SRR8316898Complete white stage 17.156
SRR8316899Complete white stage 71.486
SRR8316903Complete white stage 27.869
SRR8316902Silver flowering stage14.094
SRR8316904Silver flowering stage15.498
SRR8316905Silver flowering stage5.808
SRR8316906Gold flowering stage 15.500
SRR8316907Gold flowering stage 21.046
SRR8316908Gold flowering stage 15.034
SRP132670SRR6706286Control38.070
SRR6706287Light intensity 50%43.596
SRR6706288Light intensity 20%47.094
CNP0000432CNS0095592Slightly white alabastrum(diploid) 159.905
CNS0095593Slightly white alabastrum(diploid) 270.234
CNS0095594Slightly white alabastrum(diploid) 355.165
CNS0095595Whole white alabastrum(diploid) 246.268
CNS0095596Whole white alabastrum(diploid) 340.565
CNS0095597Whole white alabastrum(diploid) 437.129
CNS0095598Silvery flower (diploied) 144.723
CNS0095599Silvery flower (diploied) 241.876
CNS0095600Silvery flower (diploied) 335.014
CNS0095601Golden flower (diploid) 128.304
CNS0095602Golden flower (diploid) 232.309
CNS0095603Golden flower (diploid) 328.337
CNS0095604Slightly white alabastrum(tetraploid) 161.196
CNS0095605Slightly white alabastrum(tetraploid) 258.704
CNS0095606Slightly white alabastrum(tetraploid) 3104.142
CNS0095607Whole white alabastrum(tetraploid) 137.832
CNS0095608Whole white alabastrum(tetraploid) 230.893
CNS0095609Whole white alabastrum(tetraploid) 353.910
CNS0095610Silvery flower (tetraploid) 153.425
CNS0095611Silvery flower (tetraploid) 243.381
CNS0095612Silvery flower (tetraploid) 338.060
CNS0095613Golden flower (tetraploid) 126.098
CNS0095614Golden flower (tetraploid) 229.901
CNS0095615Golden flower (tetraploid) 318.045
CRA001975CRR073297Stem 184.662
CRR073298Stem 274.455
CRR073299Stem 3121.438
CRR073300Leaf 186.669
CRR073301Leaf 291.341
CRR073302Leaf 3117.523
CRR073303Juvenile bud 1112.257
CRR073304Juvenile bud 297.753
CRR073305Juvenile bud 3106.162
CRR073306Third green 141.991
CRR073307Third green 243.076
CRR073308Third green 342.730
CRR073309Second white 139.387
CRR073310Second white 234.015
CRR073311Second white 319.598
CRR073312Silver flowering 117.516
CRR073313Silver flowering 222.702
CRR073314Silver flowering 328.794
CRR073315Gold flowering 146.078
CRR073316Gold flowering 244.319
CRR073317Gold flowering 340.192
CRR073318Tawny withering 1187.677
CRR073319Tawny withering 2155.465
CRR073320Tawny withering 3235.763