Gene detail

Detail information of GWHGAAZE004467

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006358092.1	2.1684E-164	PREDICTED: heat stress transcription factor A-4a-like isoform X1 [Solanum tuberosum]
Swissprot	tr\|Q9FK72\|HFA4C_ARATH	3E-111	Heat stress transcription factor A-4c
trEMBL	tr\|M1CRG0\|M1CRG0_SOLTU	8E-165	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400073057}
TAIR10	AT5G45710.1	2E-88	winged-helix DNA-binding transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	117686066	117687388	-
GWHAAZE00000001	mRNA	117686066	117687388	-
GWHAAZE00000001	exon	117687173	117687388	-
GWHAAZE00000001	exon	117686655	117687067	-
GWHAAZE00000001	exon	117686374	117686579	-
GWHAAZE00000001	exon	117686066	117686307	-
GWHAAZE00000001	CDS	117687173	117687388	-
GWHAAZE00000001	CDS	117686655	117687067	-
GWHAAZE00000001	CDS	117686374	117686579	-
GWHAAZE00000001	CDS	117686066	117686307	-

Transcript Sequence
>GWHTAAZE004473 ATGGATGAAGCTCAATGTAATTCAAATGCGCTGGCTCCTTTTCTTGCGAAGACTTATGAGATGGTCGATGATTCTTCTACGAACTCCATTGTATCATGGAGTCAGAATAACAGAAGTTTCATAGTATGGGATCCACCAGAATTCGCAAGATTATTGTTGCCTAAATTCTTTAAGCACAATAATTTCTCCAGCTTTATCAGACAGCTGAACACTTATGGCTTTAGGAAAGTAGATCCAGAACAATGGGAATTTGCTAATGATGATTTTATTAGAGGTCAACCACACCGTTTAAAGAATATCCACAGACGAAAGCCGGTTCACAGCCATTCGATACAGAATCATCAAGGACAAGGAGCTTCATCTCCACTAACGGAATCGGAAAGACAAGGATATAAGGATGATATTGAGAAGCTAAAATTTGAAAAAGAATCGGTTCTGTTGGAGTTTCAAAAACATAAACAAGAGCAAGAGGGAATCGAGTTGCAATTACAGCCTTTAATGGAGCGTTTACAACTTGTTGAACAAAAACAAAAGAATATGTTATCCTCCATGGCTCAGACCTTGGAAAAGCCAGTCCTAATTTCAAGTTTCATCCTACAAACAGAAGAATCACGCGAGAGAAAGCGAAGTAGAGAAAGTTTAAATTCTACTTCTCTTAACAAAGAATTCTTGGATCACATGGATTCATCTTTGATGTTTTGGGAGAATTTATTAGGCAATGTTGATGAATCTTGCTTGCGACAAAAATCATCAATGGAGTTGGATGAATCGACAAGCTGTGCAGATAGCCCAGATATATGTTACACACAATTAAATCTTGACGTTGGGTCCAAAAAACGAGTAGATGAAGCTGTTACTATTCCGCCAACTGGTGTCAATGACGTGTTTTGGGAGCAGTTCTTGACTGAAAATCCAGGTTCGGCCGATACAAGGGAAGTTCAATCTGAACGAAAAGATCTCCAGAGTAAAAAGAATGAAATCAAGGCCGTTGATAATGGAAAGTTTTGGTGGAACATGAGGAACGTAAACAACCTCACTGAACAGCTGGGGCAGCTAACTCCAGCAGAGAGAACTTGA

Network for GWHGAAZE004467

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00447.18	HSF_DNA-bind	14	103	2.90E-31

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HSF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.854
	SRR3591706	second leaf	10.644
	SRR3591707	mature leaf	21.413
	SRR3591708	Shoot apex	17.809
	SRR3591709	Stem	20.542
	SRR3591710	White floral bud	11.964
	SRR3591711	White flower	15.943
	SRR3591712	Green floral bud	11.061
	SRR3591713	Yellow flower	22.805
SRP173429	SRR8316895	Juvenile bud stage	14.656
	SRR8316896	Juvenile bud stage	13.455
	SRR8316897	Juvenile bud stage	9.007
	SRR8316894	Third green stage	4.513
	SRR8316900	Third green stage	10.029
	SRR8316901	Third green stage	9.652
	SRR8316898	Complete white stage	1.544
	SRR8316899	Complete white stage	21.064
	SRR8316903	Complete white stage	3.824
	SRR8316902	Silver flowering stage	2.922
	SRR8316904	Silver flowering stage	4.287
	SRR8316905	Silver flowering stage	1.736
	SRR8316906	Gold flowering stage	9.736
	SRR8316907	Gold flowering stage	10.246
	SRR8316908	Gold flowering stage	11.961
SRP132670	SRR6706286	Control	2.865
	SRR6706287	Light intensity 50%	2.389
	SRR6706288	Light intensity 20%	2.585
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.140
	CNS0095593	Slightly white alabastrum(diploid) 2	13.535
	CNS0095594	Slightly white alabastrum(diploid) 3	14.709
	CNS0095595	Whole white alabastrum(diploid) 2	10.815
	CNS0095596	Whole white alabastrum(diploid) 3	5.179
	CNS0095597	Whole white alabastrum(diploid) 4	8.743
	CNS0095598	Silvery flower (diploied) 1	17.928
	CNS0095599	Silvery flower (diploied) 2	16.736
	CNS0095600	Silvery flower (diploied) 3	11.308
	CNS0095601	Golden flower (diploid) 1	21.586
	CNS0095602	Golden flower (diploid) 2	16.186
	CNS0095603	Golden flower (diploid) 3	18.435
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.834
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.766
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.747
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.663
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.816
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.923
	CNS0095610	Silvery flower (tetraploid) 1	7.174
	CNS0095611	Silvery flower (tetraploid) 2	6.001
	CNS0095612	Silvery flower (tetraploid) 3	4.475
	CNS0095613	Golden flower (tetraploid) 1	9.622
	CNS0095614	Golden flower (tetraploid) 2	10.142
	CNS0095615	Golden flower (tetraploid) 3	11.148
CRA001975	CRR073297	Stem 1	5.586
	CRR073298	Stem 2	5.004
	CRR073299	Stem 3	3.529
	CRR073300	Leaf 1	4.827
	CRR073301	Leaf 2	5.837
	CRR073302	Leaf 3	3.000
	CRR073303	Juvenile bud 1	2.257
	CRR073304	Juvenile bud 2	3.609
	CRR073305	Juvenile bud 3	3.480
	CRR073306	Third green 1	0.470
	CRR073307	Third green 2	0.575
	CRR073308	Third green 3	0.820
	CRR073309	Second white 1	0.111
	CRR073310	Second white 2	2.293
	CRR073311	Second white 3	1.790
	CRR073312	Silver flowering 1	2.379
	CRR073313	Silver flowering 2	2.601
	CRR073314	Silver flowering 3	2.817
	CRR073315	Gold flowering 1	7.306
	CRR073316	Gold flowering 2	10.105
	CRR073317	Gold flowering 3	4.286
	CRR073318	Tawny withering 1	5.648
	CRR073319	Tawny withering 2	13.324
	CRR073320	Tawny withering 3	6.581