Gene detail

Detail information of GWHGAAZE004474

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007025273.1	0	ATP binding protein, putative isoform 1 [Theobroma cacao]
COG	YP_004775215.1	3E-29	RHS repeat-associated core domain-containing protein
Swissprot	tr\|Q9FXF2\|RKF1_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase RFK1 (Precursor)
trEMBL	tr\|A0A059C758\|A0A059C758_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW74192.1}
TAIR10	AT1G29750.2	4E-158	receptor-like kinase in flowers 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	117764339	117770980	+
GWHAAZE00000001	mRNA	117764339	117770980	+
GWHAAZE00000001	exon	117764339	117764492	+
GWHAAZE00000001	exon	117765751	117765925	+
GWHAAZE00000001	exon	117766248	117766319	+
GWHAAZE00000001	exon	117766439	117766507	+
GWHAAZE00000001	exon	117766591	117766662	+
GWHAAZE00000001	exon	117766834	117766905	+
GWHAAZE00000001	exon	117767015	117767086	+
GWHAAZE00000001	exon	117767164	117767235	+
GWHAAZE00000001	exon	117767324	117767395	+
GWHAAZE00000001	exon	117767515	117767586	+
GWHAAZE00000001	exon	117767678	117767749	+
GWHAAZE00000001	exon	117768226	117768291	+
GWHAAZE00000001	exon	117768608	117768670	+
GWHAAZE00000001	exon	117768776	117768823	+
GWHAAZE00000001	exon	117768951	117768994	+
GWHAAZE00000001	exon	117769164	117769462	+
GWHAAZE00000001	exon	117770169	117770324	+
GWHAAZE00000001	exon	117770406	117770616	+
GWHAAZE00000001	exon	117770739	117770980	+
GWHAAZE00000001	five_prime_UTR	117764339	117764389	+
GWHAAZE00000001	CDS	117764390	117764492	+
GWHAAZE00000001	CDS	117765751	117765925	+
GWHAAZE00000001	CDS	117766248	117766319	+
GWHAAZE00000001	CDS	117766439	117766507	+
GWHAAZE00000001	CDS	117766591	117766662	+
GWHAAZE00000001	CDS	117766834	117766905	+
GWHAAZE00000001	CDS	117767015	117767086	+
GWHAAZE00000001	CDS	117767164	117767235	+
GWHAAZE00000001	CDS	117767324	117767395	+
GWHAAZE00000001	CDS	117767515	117767586	+
GWHAAZE00000001	CDS	117767678	117767749	+
GWHAAZE00000001	CDS	117768226	117768291	+
GWHAAZE00000001	CDS	117768608	117768670	+
GWHAAZE00000001	CDS	117768776	117768823	+
GWHAAZE00000001	CDS	117768951	117768994	+
GWHAAZE00000001	CDS	117769164	117769462	+
GWHAAZE00000001	CDS	117770169	117770324	+
GWHAAZE00000001	CDS	117770406	117770616	+
GWHAAZE00000001	CDS	117770739	117770980	+

Transcript Sequence
>GWHTAAZE004480 GCTCTACAATTTCTTATTAATTATTTGTCACTCACATAGATAGATATAAACATGGTCACAAGGGACGCGGTCGTTTCATTCATTCTCGCCCTGAGCTGCTGCTGCTGCTTAACGCTGACAAGATTTGCTGAATCGAAGCTTCCGCAAGCAGAAGTGGATGCTCTTCAACAAATAACTACTACGATGGGTGCCAAGCATTGGGAGTTCAACAATGATGGCGATTCTTGCCAAGTTGAAATGGTAACGCAACAGGCACCACAGGAATCTGAGGCTCGTGTTGATTGTGAATGTGGCATTGACAACAGCACCTTCTGTCATGTCGTAAGGATTGCACTCAAGTTTTTGAATCTTCCTGGTGTTCTTCCACCCGAGCTAGTGAATCTTCCTTACCTCCGTGAAATTGATTTTGCTTACAATTATCTAAGTGGTCCAATACCGCTTGAATGGGTTTCAACACGGTTGAATTTAATCTCGCTTCTTGGAAATCGGATATCTGGGGAAATCCCGAAGGAATTGGGAAATTTAACCACTCTCACATATCTGGACCTCGAAGCAAACCAGCTTATGGGAAATGTTCCTCCTGAGCTCGGGAAATTAATCAACTTGAGAACTTTGATGTTGTCCTCCAACAAGTTGACAGGGACACTGCCAATGACTTTTGCAGGGTTAAGAAATTTAACGAATTTTAGGATAAATGATAACAACTTCACTGGACCAATACCCGATTTTATACAGAACTGGAAACAACTCACAAGATTAGAAATGCATGCAAGCGGATTGGAGGGACCCATACCATCAAGTATATCTCTTCTGGATCAGTTGACTGAATTGAGGATTAGTGACATAAAGGGACCAATTCGGGGATTTCCAACACTGAGTAATGCCACTGGCATAGTAAGATTGGTGTTGAGAAACTGCAATATTTCTGGAGAAATCCCTGCATATATTTGGAACTTGAGGAATCTGGAAATGTTGTTTTTAACTGGCAACATGCTTAGTGGAAATGTACCCGAATCACTCCTGAAGGCTGGAAGTAGCATTGATCTTTCCTACAATAACTTCACATGGCAAGGCCCCGAGCAGCCCACATGTCGACAGAACATGAATCTGTACATAAACTTGTTCAAAAGCTCTTCAATGGAGAACAACTTAAAGGGACTTCTTCCATGCATGAAGGATTTCAGCTGTCCTAGATATGGGTGCTCTTTACATGTTAATAGCGGTGGAAATGATTTAGAGGTCAAAGAAAGTAATAGGGAGGTTCTGTATGAAGGAGATGGAGAAGTTGACGGTGGTTCATCAAGATATTATTTAAGTGATAATAACTGGGGATTTAGTAGCACTGGGGACTTCATGGACGATGATAATTACCAAAATACTCGTTTCATCGAAAATGTGCCATCATCAAACATCTCTGAATTGTATTCTACAGCACGGCTTTCTCCTCTTTCACTCACCTATTTTCGTTATTGCTTGGAGAATGGATCCTACAATTATTGTAGACTCATCTTCTGTATATTTCCTCGGACAGATTTTGAAGGACTCGAGTTGCAAACAGTTTCTTTTACCCTAAAACAAATAAAAGTTGCTACGAGCAACTTTGATTCTACAAACAAAGTTGGAGAAGGTGGCTTTGGTCCTGTTTACAAGGGTTCATTATCCGATGGTACCGTAATTGCAGTGAAGCAACTCTCTTCTAGATCTAGGCAAGGAAATCGTGAATTTTTGAATGAGATTGGCATGATTTCTTGTTTGCAACACCCAAATCTTGTTAAGCTTCATGGTTGTTGCATTGAAGGGGATCAATTATTACTGGTATACGAGTACATGGAAAACAATAGCCTGGCCAATGCTTTGTTCGCTTCGCAGAACAGTCAATTGATACTGGATTGGCCAACAAGGTTTAGAATTTGTATTGGGATTGCTAAAGGTTTAGCCTTTCTCCATGAAGAATCGAGAATCAAAATTGTTCACAGAGACATTAAAGCTACTAATGTGCTCCTTGATAGAGACCTAAACCCTAAAATTTCCGACTTTGGATTGGCTAGGCTTAATGAGGATGAGAACACCCACATTAGCACTCGGATTGCTGGAACAATGTGA

Network for GWHGAAZE004474

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11721.9	Malectin	386	524	1.20E-08
PF07714.18	PK_Tyr_Ser-Thr	520	673	1.30E-34

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.854
	SRR3591706	second leaf	5.348
	SRR3591707	mature leaf	7.253
	SRR3591708	Shoot apex	5.362
	SRR3591709	Stem	11.135
	SRR3591710	White floral bud	3.171
	SRR3591711	White flower	3.271
	SRR3591712	Green floral bud	4.438
	SRR3591713	Yellow flower	3.590
SRP173429	SRR8316895	Juvenile bud stage	2.894
	SRR8316896	Juvenile bud stage	3.328
	SRR8316897	Juvenile bud stage	2.435
	SRR8316894	Third green stage	1.530
	SRR8316900	Third green stage	2.951
	SRR8316901	Third green stage	2.693
	SRR8316898	Complete white stage	0.914
	SRR8316899	Complete white stage	3.890
	SRR8316903	Complete white stage	2.009
	SRR8316902	Silver flowering stage	0.566
	SRR8316904	Silver flowering stage	1.357
	SRR8316905	Silver flowering stage	0.441
	SRR8316906	Gold flowering stage	2.543
	SRR8316907	Gold flowering stage	1.426
	SRR8316908	Gold flowering stage	3.545
SRP132670	SRR6706286	Control	2.864
	SRR6706287	Light intensity 50%	2.555
	SRR6706288	Light intensity 20%	2.630
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.011
	CNS0095593	Slightly white alabastrum(diploid) 2	2.353
	CNS0095594	Slightly white alabastrum(diploid) 3	1.551
	CNS0095595	Whole white alabastrum(diploid) 2	1.893
	CNS0095596	Whole white alabastrum(diploid) 3	1.128
	CNS0095597	Whole white alabastrum(diploid) 4	1.399
	CNS0095598	Silvery flower (diploied) 1	7.781
	CNS0095599	Silvery flower (diploied) 2	5.631
	CNS0095600	Silvery flower (diploied) 3	4.702
	CNS0095601	Golden flower (diploid) 1	7.453
	CNS0095602	Golden flower (diploid) 2	9.478
	CNS0095603	Golden flower (diploid) 3	10.235
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.288
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.984
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.881
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.788
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.625
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.103
	CNS0095610	Silvery flower (tetraploid) 1	2.457
	CNS0095611	Silvery flower (tetraploid) 2	2.296
	CNS0095612	Silvery flower (tetraploid) 3	0.636
	CNS0095613	Golden flower (tetraploid) 1	2.048
	CNS0095614	Golden flower (tetraploid) 2	2.735
	CNS0095615	Golden flower (tetraploid) 3	1.173
CRA001975	CRR073297	Stem 1	3.073
	CRR073298	Stem 2	2.611
	CRR073299	Stem 3	1.174
	CRR073300	Leaf 1	2.029
	CRR073301	Leaf 2	1.544
	CRR073302	Leaf 3	1.170
	CRR073303	Juvenile bud 1	0.971
	CRR073304	Juvenile bud 2	0.503
	CRR073305	Juvenile bud 3	1.524
	CRR073306	Third green 1	0.057
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.132
	CRR073309	Second white 1	0.034
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.151
	CRR073312	Silver flowering 1	0.279
	CRR073313	Silver flowering 2	0.147
	CRR073314	Silver flowering 3	0.745
	CRR073315	Gold flowering 1	0.632
	CRR073316	Gold flowering 2	3.132
	CRR073317	Gold flowering 3	0.729
	CRR073318	Tawny withering 1	3.705
	CRR073319	Tawny withering 2	5.134
	CRR073320	Tawny withering 3	2.524