Gene detail

Detail information of GWHGAAZE004480

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010273443.1	0	PREDICTED: serine/threonine-protein kinase HT1-like [Nelumbo nucifera]
COG	YP_007836524.1	6E-18	Serine/threonine protein kinase
Swissprot	tr\|Q2MHE4\|HT1_ARATH	1E-34	Serine/threonine-protein kinase HT1
trEMBL	tr\|A0A061GEN2\|A0A061GEN2_THECC	0	Integrin-linked protein kinase family protein isoform 1 {ECO:0000313\|EMBL:EOY27878.1}
TAIR10	AT4G18950.1	1E-147	Integrin-linked protein kinase family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	117844042	117850924	+
GWHAAZE00000001	mRNA	117844042	117850924	+
GWHAAZE00000001	exon	117844042	117844387	+
GWHAAZE00000001	exon	117845430	117845504	+
GWHAAZE00000001	exon	117845641	117845736	+
GWHAAZE00000001	exon	117847843	117847928	+
GWHAAZE00000001	exon	117848013	117848133	+
GWHAAZE00000001	exon	117848382	117848461	+
GWHAAZE00000001	exon	117848620	117848682	+
GWHAAZE00000001	exon	117849273	117849354	+
GWHAAZE00000001	exon	117849456	117849577	+
GWHAAZE00000001	exon	117850641	117850752	+
GWHAAZE00000001	exon	117850823	117850924	+
GWHAAZE00000001	five_prime_UTR	117844042	117844195	+
GWHAAZE00000001	CDS	117844196	117844387	+
GWHAAZE00000001	CDS	117845430	117845504	+
GWHAAZE00000001	CDS	117845641	117845736	+
GWHAAZE00000001	CDS	117847843	117847928	+
GWHAAZE00000001	CDS	117848013	117848133	+
GWHAAZE00000001	CDS	117848382	117848461	+
GWHAAZE00000001	CDS	117848620	117848682	+
GWHAAZE00000001	CDS	117849273	117849354	+
GWHAAZE00000001	CDS	117849456	117849577	+
GWHAAZE00000001	CDS	117850641	117850752	+
GWHAAZE00000001	CDS	117850823	117850924	+

Transcript Sequence
>GWHTAAZE004486 CAGCAAGCAAATTGTTTCAATTTCTGTTTTTTATGGAATCGATTACGCCGGTGAGGTATAAACTTAGGAAACAGTCATCGCTAGCGCCGGATCGGAGCGAGGCGAGTGTGGAGGAGGTAGACGATGCGGAGGGATTGATCCGAGGGTGAGGCTGATGTATTTGGCAAATGAGGGCGATTTGGAGGGGATTATTGAGTTGCTAGATTCCGGTACCGATGTCAATTTCCGAGATATTGATGATCGGACGGCGCTACACGTGTCGGCTTGCCATGGTTGTATTGAAGTGGTGGAGCTTTTGCTTGAGAGAGGTGCTGAAGTTGATCCCAAAGATCGTTGGGGTAGTACGCCTCTTGCAGATGCGATACATTATAAGAATCATGATGTCATCAAACTTTTGGAGAAAAATGGTGCAAAGCCACTAGTGGCCCCCATGCACGTCGGAAATGCCCGTGAAGTCCCCGAATATGAAATTGACCCCAAGGAACTTGATTTCACAAACAGTGTTGAAATTACTAAGGGAACCTTCCATATTGCTTCCTGGAGGGGAACAGAAGTTGCTGTAAAGAAGCTTGGGAAGGAAGTGATTACTGACGAGGATAAAGTGAGGGCATTTAGGGATGAACTTGCATTGCTTCAGAAAATACGCCATCCAAATGTGGTTCAATTTCTCGGTGCTGTTACTCAAAGTAGTCCAATGATGATTGTGACTGAGTATTTACCTAAGGGTGATCTACGTGCATTTTTGAACCGAAAAGGAGCCCTAAAACCAACAACAGCTGTGAGATTCGCAATGGATATAGCAAGAGGATTGAACTATCTGCACGAGAATAAACCAGACGCAATTATTCACCGTGATCTTGAGCCTTCGTATTTGGCTCCAGAGGTTTTCAGAAATGAAGAATATGATACCAAAGTGGATGTTTTTTCATTTGCTTTAATTTTACAAGAGATGATTGAAGGCTCCTTACCGTTTTCTGCAAAGAAAGCAAACGAGGTCCCGAAATCCTATGCTGAAAAGCAGCGTCCTCCTTTTAGAGCTCCAGCAAAGTGTTACGCTCATGGACTTAAAGAGTTGATTGAGGATTGTTGGACCGAGAAGCCAGCCCAGAGACCAACATTCAAGCAAATAATCCAACGGTTGGAGTCCATCTATAACAGTTTCAGTCAAAAGAGGCGTTGGAAGGTTAGACCATTGAAATGCTTTCAGAATCTTGAAGCAATGTGGAAGAAAGAGAACTCCAACGGAAGAAGCCGCAGCCGTTCTCATTCTACTAACAACTTGTAG

Network for GWHGAAZE004480

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12796.8	Ank_2	2	88	1.00E-12
PF07714.18	PK_Tyr_Ser-Thr	118	235	3.50E-26
PF07714.18	PK_Tyr_Ser-Thr	238	329	6.00E-17

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-5

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.386
	SRR3591706	second leaf	19.199
	SRR3591707	mature leaf	14.451
	SRR3591708	Shoot apex	23.291
	SRR3591709	Stem	28.346
	SRR3591710	White floral bud	22.733
	SRR3591711	White flower	21.765
	SRR3591712	Green floral bud	26.446
	SRR3591713	Yellow flower	24.201
SRP173429	SRR8316895	Juvenile bud stage	17.711
	SRR8316896	Juvenile bud stage	23.394
	SRR8316897	Juvenile bud stage	15.986
	SRR8316894	Third green stage	10.199
	SRR8316900	Third green stage	27.284
	SRR8316901	Third green stage	27.547
	SRR8316898	Complete white stage	8.165
	SRR8316899	Complete white stage	35.595
	SRR8316903	Complete white stage	11.471
	SRR8316902	Silver flowering stage	8.141
	SRR8316904	Silver flowering stage	9.860
	SRR8316905	Silver flowering stage	4.911
	SRR8316906	Gold flowering stage	20.370
	SRR8316907	Gold flowering stage	21.333
	SRR8316908	Gold flowering stage	24.092
SRP132670	SRR6706286	Control	19.484
	SRR6706287	Light intensity 50%	20.750
	SRR6706288	Light intensity 20%	23.886
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.910
	CNS0095593	Slightly white alabastrum(diploid) 2	23.723
	CNS0095594	Slightly white alabastrum(diploid) 3	22.538
	CNS0095595	Whole white alabastrum(diploid) 2	17.150
	CNS0095596	Whole white alabastrum(diploid) 3	16.119
	CNS0095597	Whole white alabastrum(diploid) 4	15.830
	CNS0095598	Silvery flower (diploied) 1	25.822
	CNS0095599	Silvery flower (diploied) 2	14.676
	CNS0095600	Silvery flower (diploied) 3	11.390
	CNS0095601	Golden flower (diploid) 1	15.232
	CNS0095602	Golden flower (diploid) 2	12.730
	CNS0095603	Golden flower (diploid) 3	11.762
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.943
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.494
	CNS0095606	Slightly white alabastrum(tetraploid) 3	39.372
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.997
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.233
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.798
	CNS0095610	Silvery flower (tetraploid) 1	24.014
	CNS0095611	Silvery flower (tetraploid) 2	19.601
	CNS0095612	Silvery flower (tetraploid) 3	22.630
	CNS0095613	Golden flower (tetraploid) 1	25.203
	CNS0095614	Golden flower (tetraploid) 2	24.725
	CNS0095615	Golden flower (tetraploid) 3	22.928
CRA001975	CRR073297	Stem 1	23.600
	CRR073298	Stem 2	21.620
	CRR073299	Stem 3	12.719
	CRR073300	Leaf 1	28.233
	CRR073301	Leaf 2	26.819
	CRR073302	Leaf 3	16.511
	CRR073303	Juvenile bud 1	17.528
	CRR073304	Juvenile bud 2	14.728
	CRR073305	Juvenile bud 3	18.007
	CRR073306	Third green 1	3.303
	CRR073307	Third green 2	2.404
	CRR073308	Third green 3	5.434
	CRR073309	Second white 1	6.135
	CRR073310	Second white 2	4.476
	CRR073311	Second white 3	5.478
	CRR073312	Silver flowering 1	6.425
	CRR073313	Silver flowering 2	5.923
	CRR073314	Silver flowering 3	4.735
	CRR073315	Gold flowering 1	4.869
	CRR073316	Gold flowering 2	8.270
	CRR073317	Gold flowering 3	3.601
	CRR073318	Tawny withering 1	15.856
	CRR073319	Tawny withering 2	16.825
	CRR073320	Tawny withering 3	13.920