Detail information of GWHGAAZE004507


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008439684.12.91892E-85PREDICTED: 60S ribosomal protein L32-1-like [Cucumis melo]
COGNP_614508.11E-2050S ribosomal protein L32
Swissprottr|P49211|RL321_ARATH3E-8260S ribosomal protein L32-1
trEMBLtr|A0A059C659|A0A059C659_EUCGR2E-85Uncharacterized protein {ECO:0000313|EMBL:KCW73739.1}
TAIR10AT4G18100.15E-59Ribosomal protein L32e

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene118158967118161753-
GWHAAZE00000001mRNA118158967118161753-
GWHAAZE00000001exon118161664118161753-
GWHAAZE00000001exon118159370118159551-
GWHAAZE00000001exon118158967118159265-
GWHAAZE00000001CDS118161664118161753-
GWHAAZE00000001CDS118159370118159551-
GWHAAZE00000001CDS118159136118159265-
GWHAAZE00000001three_prime_UTR118158967118159135-
Transcript Sequence

Network for GWHGAAZE004507

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01655.19Ribosomal_L32e161226.10E-48
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02912RP-L32e, RPL32 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf495.717
SRR3591706second leaf214.889
SRR3591707mature leaf99.209
SRR3591708Shoot apex680.249
SRR3591709Stem218.332
SRR3591710White floral bud143.148
SRR3591711White flower169.758
SRR3591712Green floral bud385.171
SRR3591713Yellow flower89.012
SRP173429 SRR8316895Juvenile bud stage 209.685
SRR8316896Juvenile bud stage 283.474
SRR8316897Juvenile bud stage 159.715
SRR8316894Third green stage 108.241
SRR8316900Third green stage 319.269
SRR8316901Third green stage 304.689
SRR8316898Complete white stage 43.028
SRR8316899Complete white stage 255.663
SRR8316903Complete white stage 70.438
SRR8316902Silver flowering stage52.500
SRR8316904Silver flowering stage50.418
SRR8316905Silver flowering stage22.832
SRR8316906Gold flowering stage 63.803
SRR8316907Gold flowering stage 61.006
SRR8316908Gold flowering stage 78.367
SRP132670SRR6706286Control248.312
SRR6706287Light intensity 50%249.596
SRR6706288Light intensity 20%288.773
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1478.940
CNS0095593Slightly white alabastrum(diploid) 2585.338
CNS0095594Slightly white alabastrum(diploid) 3488.899
CNS0095595Whole white alabastrum(diploid) 2416.486
CNS0095596Whole white alabastrum(diploid) 3507.044
CNS0095597Whole white alabastrum(diploid) 4345.632
CNS0095598Silvery flower (diploied) 1226.010
CNS0095599Silvery flower (diploied) 2172.998
CNS0095600Silvery flower (diploied) 3119.677
CNS0095601Golden flower (diploid) 1176.216
CNS0095602Golden flower (diploid) 2134.675
CNS0095603Golden flower (diploid) 3128.725
CNS0095604Slightly white alabastrum(tetraploid) 1423.469
CNS0095605Slightly white alabastrum(tetraploid) 2454.565
CNS0095606Slightly white alabastrum(tetraploid) 3554.158
CNS0095607Whole white alabastrum(tetraploid) 1262.148
CNS0095608Whole white alabastrum(tetraploid) 2246.530
CNS0095609Whole white alabastrum(tetraploid) 3420.714
CNS0095610Silvery flower (tetraploid) 199.104
CNS0095611Silvery flower (tetraploid) 298.926
CNS0095612Silvery flower (tetraploid) 358.997
CNS0095613Golden flower (tetraploid) 176.095
CNS0095614Golden flower (tetraploid) 294.349
CNS0095615Golden flower (tetraploid) 369.861
CRA001975CRR073297Stem 1506.486
CRR073298Stem 2499.629
CRR073299Stem 3551.330
CRR073300Leaf 1485.500
CRR073301Leaf 2538.785
CRR073302Leaf 3710.821
CRR073303Juvenile bud 1539.750
CRR073304Juvenile bud 2285.687
CRR073305Juvenile bud 3401.211
CRR073306Third green 144.810
CRR073307Third green 254.650
CRR073308Third green 363.637
CRR073309Second white 167.439
CRR073310Second white 247.967
CRR073311Second white 331.524
CRR073312Silver flowering 145.632
CRR073313Silver flowering 274.389
CRR073314Silver flowering 363.403
CRR073315Gold flowering 1219.990
CRR073316Gold flowering 2236.464
CRR073317Gold flowering 3248.170
CRR073318Tawny withering 1600.739
CRR073319Tawny withering 2507.695
CRR073320Tawny withering 3607.580