Gene detail

Detail information of GWHGAAZE004509

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002271605.1	0	PREDICTED: protein MEI2-like 5 [Vitis vinifera]
COG	YP_431779.1	0.000005	RNA-binding protein
Swissprot	tr\|Q8VWF5\|AML5_ARATH	0	Protein MEI2-like 5
trEMBL	tr\|F6HMG6\|F6HMG6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55755.1}
TAIR10	AT1G29400.2	0	MEI2-like protein 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	118181640	118188619	+
GWHAAZE00000001	mRNA	118181640	118188619	+
GWHAAZE00000001	exon	118181640	118181670	+
GWHAAZE00000001	exon	118181760	118181909	+
GWHAAZE00000001	exon	118182017	118182432	+
GWHAAZE00000001	exon	118184353	118184511	+
GWHAAZE00000001	exon	118184588	118184704	+
GWHAAZE00000001	exon	118184832	118184983	+
GWHAAZE00000001	exon	118185837	118185928	+
GWHAAZE00000001	exon	118186072	118187002	+
GWHAAZE00000001	exon	118187106	118187190	+
GWHAAZE00000001	exon	118187284	118187352	+
GWHAAZE00000001	exon	118187772	118187951	+
GWHAAZE00000001	exon	118188482	118188619	+
GWHAAZE00000001	CDS	118181640	118181670	+
GWHAAZE00000001	CDS	118181760	118181909	+
GWHAAZE00000001	CDS	118182017	118182432	+
GWHAAZE00000001	CDS	118184353	118184511	+
GWHAAZE00000001	CDS	118184588	118184704	+
GWHAAZE00000001	CDS	118184832	118184983	+
GWHAAZE00000001	CDS	118185837	118185928	+
GWHAAZE00000001	CDS	118186072	118187002	+
GWHAAZE00000001	CDS	118187106	118187190	+
GWHAAZE00000001	CDS	118187284	118187352	+
GWHAAZE00000001	CDS	118187772	118187951	+
GWHAAZE00000001	CDS	118188482	118188619	+

Transcript Sequence
>GWHTAAZE004515 ATGCAGCAGTCATCAGATCATCCCTTATCAGGTCCCTCAAAGATAATGACGATGAATGTCCCCAAGGCTAAGGATGTTAGAAATGGAGCATGGGGGATCTTACCTGGATCGGATGCCTATCATGCCTCAAGTGATGCGTCTCTTTTCACAAGCTCGTTACCTGTTCTTCCCCATGAAAAGTTGAACAAACTCCAGCCTGACGGGGAGGGTAATAATGACTTCCTTGAAGATGCTGAGGATCATGCAATTGGAAGCTTGCTTCCTGGTGATGAAGATGAGCTTTTAGCTGGTATAATGGATGGGTTTGACCTAAATGGGATGCCTAATCGGGTGGATGACTTGGAAGAGTATGACCTTTTTGGTAGTGGAGGAGGTCTGGAATTGGAATCTGATCTGCAAGAGAACCATAGTATGGGTATGTCGAATGTAAGTTTGTCTGATGGTGGTGTTGGCAATGGGGTGGCCCATTACAGTCTTCCAAATGGCGTGGGAACTGTTGCTGGAGAGCATCCATACGGAGAGCATCCTTCCAGGACATTATTTGTGCGCAACATCAATAGTAATGTTGAAGATTCAGAACTGCAAGCTCTCTTTGAGCAATATGGGGATATCAGAACTCTGTATACTGCATGCAAGCATAGGGGCTTTGTGATGATATCGTACTACGATATTCGTGCTGCTCGAACTGCTATGCGAGCATTACAAAACAAGCCGCTTCGTCGGAGGAAGCTGGACATTCACTTCTCAATCCCAAAGGATAATCCGTCGGACAAGGATATTAATCAAGGGACTTTAGTAGTTTTTAATTTGGATCCATCTGTTTCAACCGACGACCTTCGACAAATATTTGGTGCATATGGCGAGGTTAAAGAGATAAGGGAAACGCCACACAAGAGGCACCATAAGTTCATTGAATATTATGATGTTAGAGCAGCAGAAGCAGCACTTAGGTCATTAAACAGGAGTGATATAGCTGGGAAACGCATAAAGCTTGAACCTAGTCGCCCTGGGGGAGCACGTCGGAGCCTAATGTTACAACTGAATCAAGAGCTTGAACAAGATGAAACTCGGAGTTTTCTACACCAGATGGGTTCCTCCATAGCCAACTCTCCTCCAGGTAACTGGCCACAGTTTGGTAGCCCTATAGAACGCAATCTGCAAACTCTTAGCAAATCACCTGTTCTCGGATCTTTGAGCCCCACAATGGGAAGTAACTTACCTGGATTAGCGTCAATTCTGAATTCTCAAGTATCAAACCCGGCTAGGGTTGCACCTATTGGCAAGGATCATGCAAGGGCTACTGTTGAACATATGTTTACCAACGGAAATCTAAATCACGGAGCTGCCTTTCAACATTCTCATTCACTTCCAGAGCCAAAATTGAGCCAATATTCTGCAACTATGTCGTCTTTTGGTGCTTCAAGTTCAAATGGATCAGGTATTGAAACGTTGTCGGGTCCACAATTTCTTTGGGGAAGCTCCAATCTTTACCCAGATAAGACTAAAGCTGCTGCTTGGCGAGCACCACCATCTGTGGGGATGGGGTACCCATTCGCATCAAACGGACAAACCCAAGGTTTCCCATACACCAGTCGCCATGGATCTTTTACTAGTTCATCTCAAAATCATCAAGTTGGGTCTGCTCCACCTGGGGTTCCTTTTGAAAGGCACTTCGGTTATTACCAGGAGTCACCAGAAGCATTATATATGAGTGCTGCTGCGTTTGGAGGTATGGGTTTAAACCACAGTGAACGGAATTTTATGGGTGCTCGTGGTGCTGTGAATGCAGGCATAGCTGAAAATGGTTCACCTGGTTTCGGTATGATGTCTTCTTCCCCAAGACTTAGCCAGATGTTCCTAGGCAATGGTCACTACCCAGGACTGGGACCCACTAGCATGGATGGTTTGGCAGAGCGGGGCCGGATTCGACGTGTTGAGCCCAATGGAACTCAGATTGACAGCAAGAAACAATTTCAGCTTGATCTGGACAAGATTTTAAGTGGGGAAGATGCTCGGACAACTTTAATGATTAAGAATATCCCTAATAAGTACACATCAAAGATGTTGCTAGCTGCCATTGACGAAAACCACAAGGGTACTTATGATTTTCTCTATCTGCCTATTGATTTTAAGAATAAATGCAATGTTGGCTATGCTTTTATCAACATGCTATCTCCTTCACACATTATCCCATTTTACCAGGCATTCAATGGAAAGAAGTGGGAGAAGTTCAACAGTGAGAAAGTTGCTTCCTTGGCCTATGCTCGAATCCAGGGCAAAATGGCTCTTGTCACCCACTTTCAGAACTCAAGCTTGATGAACGAAGATAAGCGCTGTCGGCCAATTCTTTTTCACTCTGAGGGCTCGGAGGCTGTTGATCAGGTTGTTCAGGAACAACTTGCTTCAAATAATTTGAACATGCAAATATGTTGGTCAAACGGCTCAGACTTGGGAGATTCTCCAGGAAACCCTATAATAGATGGTACAGAAGAGAAGAACTCTTCCCCTGAGCAGTGCTAA

Network for GWHGAAZE004509

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	180	244	4.10E-10
PF00076.23	RRM_1	265	330	1.20E-11
PF04059.13	RRM_2	672	768	5.80E-55

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	43.752
	SRR3591706	second leaf	23.868
	SRR3591707	mature leaf	43.244
	SRR3591708	Shoot apex	31.381
	SRR3591709	Stem	70.554
	SRR3591710	White floral bud	26.386
	SRR3591711	White flower	44.134
	SRR3591712	Green floral bud	24.045
	SRR3591713	Yellow flower	52.070
SRP173429	SRR8316895	Juvenile bud stage	19.149
	SRR8316896	Juvenile bud stage	28.246
	SRR8316897	Juvenile bud stage	13.448
	SRR8316894	Third green stage	10.702
	SRR8316900	Third green stage	19.954
	SRR8316901	Third green stage	21.637
	SRR8316898	Complete white stage	3.732
	SRR8316899	Complete white stage	23.904
	SRR8316903	Complete white stage	9.939
	SRR8316902	Silver flowering stage	6.391
	SRR8316904	Silver flowering stage	12.355
	SRR8316905	Silver flowering stage	5.894
	SRR8316906	Gold flowering stage	23.746
	SRR8316907	Gold flowering stage	24.216
	SRR8316908	Gold flowering stage	33.573
SRP132670	SRR6706286	Control	23.575
	SRR6706287	Light intensity 50%	23.251
	SRR6706288	Light intensity 20%	22.221
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.952
	CNS0095593	Slightly white alabastrum(diploid) 2	10.955
	CNS0095594	Slightly white alabastrum(diploid) 3	12.586
	CNS0095595	Whole white alabastrum(diploid) 2	11.754
	CNS0095596	Whole white alabastrum(diploid) 3	10.266
	CNS0095597	Whole white alabastrum(diploid) 4	12.397
	CNS0095598	Silvery flower (diploied) 1	30.432
	CNS0095599	Silvery flower (diploied) 2	19.429
	CNS0095600	Silvery flower (diploied) 3	25.531
	CNS0095601	Golden flower (diploid) 1	26.790
	CNS0095602	Golden flower (diploid) 2	46.796
	CNS0095603	Golden flower (diploid) 3	43.694
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.648
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.534
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.106
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.626
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.811
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.124
	CNS0095610	Silvery flower (tetraploid) 1	36.564
	CNS0095611	Silvery flower (tetraploid) 2	39.436
	CNS0095612	Silvery flower (tetraploid) 3	31.946
	CNS0095613	Golden flower (tetraploid) 1	31.343
	CNS0095614	Golden flower (tetraploid) 2	44.718
	CNS0095615	Golden flower (tetraploid) 3	55.275
CRA001975	CRR073297	Stem 1	34.237
	CRR073298	Stem 2	28.110
	CRR073299	Stem 3	22.786
	CRR073300	Leaf 1	24.738
	CRR073301	Leaf 2	21.486
	CRR073302	Leaf 3	14.684
	CRR073303	Juvenile bud 1	11.123
	CRR073304	Juvenile bud 2	5.824
	CRR073305	Juvenile bud 3	17.068
	CRR073306	Third green 1	5.249
	CRR073307	Third green 2	4.726
	CRR073308	Third green 3	6.332
	CRR073309	Second white 1	10.675
	CRR073310	Second white 2	13.583
	CRR073311	Second white 3	14.295
	CRR073312	Silver flowering 1	18.565
	CRR073313	Silver flowering 2	18.368
	CRR073314	Silver flowering 3	18.431
	CRR073315	Gold flowering 1	10.603
	CRR073316	Gold flowering 2	21.428
	CRR073317	Gold flowering 3	15.745
	CRR073318	Tawny withering 1	24.603
	CRR073319	Tawny withering 2	17.960
	CRR073320	Tawny withering 3	23.284