Gene detail

Detail information of GWHGAAZE004528

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010247422.1	1.6354E-176	PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Nelumbo nucifera]
Swissprot	tr\|P07369\|CB2G_SOLLC	6E-176	Chlorophyll a-b binding protein 3C, chloroplastic (Precursor)
trEMBL	tr\|A0A059CBZ6\|A0A059CBZ6_EUCGR	9E-176	Uncharacterized protein {ECO:0000313\|EMBL:KCW75953.1}
TAIR10	AT1G29930.1	5E-133	chlorophyll A/B binding protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	118412139	118416974	+
GWHAAZE00000001	mRNA	118412139	118416974	+
GWHAAZE00000001	exon	118412139	118412207	+
GWHAAZE00000001	exon	118412295	118412687	+
GWHAAZE00000001	exon	118415555	118415593	+
GWHAAZE00000001	exon	118416162	118416974	+
GWHAAZE00000001	CDS	118412139	118412207	+
GWHAAZE00000001	CDS	118412295	118412687	+
GWHAAZE00000001	CDS	118415555	118415593	+
GWHAAZE00000001	CDS	118416162	118416974	+

Transcript Sequence
>GWHTAAZE004534 ATGGCTCTATCATCCCAAACTCTTATTAGAAAGTCAATAAAGTTGCTCCGTCTACTTTGGAGCTCTTCGAACACTGCTGAACTTTCGACTAACATAGAAACTTTTGCTAAGAACCGTGAGCTTAAGATAATCCATTGCAGATGGGCCATACCTAGAGCCCTTGGGTGCGTCTTTCTTAAGCTCTTAGCCCATAGCAGTGTCAAGTTTGGTGAAGCCATGTGGTTCAAGGCTGGAGCTCAAATCTTCAACGAGGGCGGTCTTGACTACTTGGGTAATCCAAGCCTAGTCCATGCCCAAAGCATTTTGGCCATTTGGGCAACACAAGTTATATTGGTGGGTGTTATTGTGGGTCATCGTGTTGCTGGTAAGCCGCTAGGTGAGGTGACTGGCCCACTTTACCCAGGGGGAAGCTTTGACCCATTGGACCTTGCTGATGATCCCGAGGCTTTTACAGAGCTTAGGGACTCTGCCTATAGCAATAGTGTTAAACTTCAAAGCCAGTTTTTAGTTCCAATGGCTTCTTCAACAATGGCTCTCTACTCCACAGCTTTTGCTGGAAAGGCAGTTAAAGCCGCTCCATCTGCATCATCAGAGCTCTTCGGCACTGCACGAATATCAATGAGAAAAACTGCCAAAAAGCCAGTCTCATCCGACAGCCCATGGTACGGCCCGGACCGAGTCAAGTACTTGGGCCCGTTCTCCGGTGAGGCCCCATCTTACCTCACCGGTGAATTCCCTGGTGACTATGGTTGGGACACTGCTGGACTTTCGGCCGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAGGTGATCCACTGCAGATGGGCCATGCTCGGAGCTCTTGGGTGCGTCTTCCCTGAGCTTTTGGCCCGCAATGGTGTCAAGTTCGGTGAAGCCGTATGGTTCAAGGCTGGAGCCCAAATATTCAGTGAGGGTGGACTTGACTACTTGGGCAACCCGAGCCTGGTCCATGCCCAAAGCATTTTGGCCATTTGGGCTACACAAGTCATCTTGATGGGTGCAATTGAGGGCTATCGTGTTGCCGGGGGACCACTAGGTGAGGTGACTGACCCACTTTACCCAGGTGGAAGTTTTGACCCATTAGGCCTTGCTGATGATCCTGAGGCTTTTGCTGAACTTAAGGTGAAGGAGATCAAGAATGGAAGATTGGCCATGTTCTCCATGTTTGGGTTCTTTGTTCAGGCAATTGTTACTGGAAAGGGCCCATTGGAAAATCTTGCTGACCATCTTGCGGATCCCGTTAGCAACAATGCTTGGGCTTATGCCACTAACTTTGTCCCTGGAAAGTGA

Network for GWHGAAZE004528

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00504.22	Chloroa_b-bind	26	155	2.10E-14
PF00504.22	Chloroa_b-bind	237	403	3.80E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08912	LHCB1	Metabolic pathways	map01100
K08912	LHCB1	Photosynthesis - antenna proteins	map00196

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	308.805
	SRR3591706	second leaf	4157.705
	SRR3591707	mature leaf	2001.596
	SRR3591708	Shoot apex	1071.097
	SRR3591709	Stem	168.458
	SRR3591710	White floral bud	5.557
	SRR3591711	White flower	6.213
	SRR3591712	Green floral bud	5.263
	SRR3591713	Yellow flower	1.193
SRP173429	SRR8316895	Juvenile bud stage	0.106
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.066
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.009
	SRR8316898	Complete white stage	0.016
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.012
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.042
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.018
	SRR6706287	Light intensity 50%	0.001
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.001
	CNS0095594	Slightly white alabastrum(diploid) 3	0.055
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.037
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.182
	CNS0095600	Silvery flower (diploied) 3	0.086
	CNS0095601	Golden flower (diploid) 1	0.046
	CNS0095602	Golden flower (diploid) 2	0.132
	CNS0095603	Golden flower (diploid) 3	0.030
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.094
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.013
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.115
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.022
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.141
	CNS0095612	Silvery flower (tetraploid) 3	0.008
	CNS0095613	Golden flower (tetraploid) 1	0.008
	CNS0095614	Golden flower (tetraploid) 2	0.057
	CNS0095615	Golden flower (tetraploid) 3	0.061
CRA001975	CRR073297	Stem 1	0.087
	CRR073298	Stem 2	0.007
	CRR073299	Stem 3	0.033
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.007
	CRR073302	Leaf 3	0.019
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.006
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.009
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.831
	CRR073316	Gold flowering 2	0.497
	CRR073317	Gold flowering 3	0.938
	CRR073318	Tawny withering 1	0.007
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000