Gene detail

Detail information of GWHGAAZE004531

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010247431.1	5.17682E-85	PREDICTED: chlorophyll a-b binding protein 1D-like [Nelumbo nucifera]
Swissprot	tr\|P08222\|CB22_CUCSA	1E-76	Chlorophyll a-b binding protein of LHCII type 1 (Fragment)
trEMBL	tr\|V7C4Z9\|V7C4Z9_PHAVU	3E-76	Uncharacterized protein {ECO:0000313\|EMBL:ESW23991.1}
TAIR10	AT2G34430.1	2E-57	light-harvesting chlorophyll-protein complex II subunit B1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	118428141	118431675	+
GWHAAZE00000001	mRNA	118428141	118431675	+
GWHAAZE00000001	exon	118428141	118428266	+
GWHAAZE00000001	exon	118428514	118428911	+
GWHAAZE00000001	exon	118431415	118431521	+
GWHAAZE00000001	exon	118431620	118431675	+
GWHAAZE00000001	CDS	118428141	118428266	+
GWHAAZE00000001	CDS	118428514	118428911	+
GWHAAZE00000001	CDS	118431415	118431521	+
GWHAAZE00000001	CDS	118431620	118431675	+

Transcript Sequence
>GWHTAAZE004537 ATGGCTGCTTCAACAATGGCTCTCTCCTCCCCAGCTCTTGCTGGAAAGATGGTGAAAGTAGCTCCCTTTGCATCAGAACTCTTTGGCACTGCAAGAATTTCAATGAGAAAATCTGTCAAAAAGCAGGTCGGAGCCCAAATCTTTAGTGAGGGTGTACTTGACTACTTGGGTAACCTGAGCTTAGTCCATGCTCAGAGCATTTTGACCATCTCGGCTACACAAGTTATATTGATGGGTGCTATCGAGGGCTACCATATTGCTGGTGGGCCACTCGGTGAGGTGACCGACCCACTATATCCAGATGGAAGCTTTGACCCATTGGGGTTGGCCGATGATCCTGAGGTCTTTGTAGAGCTAAAAGTAAAGGAAATCAAGAAACGTAGACTAGCCGCGTTCTCTATGATTGGATTCTTTGTTCAGGCCATTGTTACTGGAAAGGGCCCACTAGAAAACCTTGCTGATCACCTTGCCAATCCAGTTAGCAAAAATGCTTGGGCTTATGCCACCAACTTTGTCCCTGGAAAATGGGACATGCTTGGAGCTCTCGGGTGCATCTTCCCCAAGCTTTTGGCATACAATGGCGTCAAGTTCAGTGAAGCCGTGAGGTTCAAGGTTGGAGCACAAATCTTTAGTGCTATTGAAGGATACCGTGTTGCTGGTGGGCCACTTGGTGAAGTTACCCACTGA

Network for GWHGAAZE004531

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00504.22	Chloroa_b-bind	48	141	1.30E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08912	LHCB1	Metabolic pathways	map01100
K08912	LHCB1	Photosynthesis - antenna proteins	map00196

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.306
	SRR3591706	second leaf	3.108
	SRR3591707	mature leaf	9.863
	SRR3591708	Shoot apex	1.747
	SRR3591709	Stem	1.423
	SRR3591710	White floral bud	0.117
	SRR3591711	White flower	0.095
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.061
SRP173429	SRR8316895	Juvenile bud stage	1.815
	SRR8316896	Juvenile bud stage	1.300
	SRR8316897	Juvenile bud stage	0.169
	SRR8316894	Third green stage	0.824
	SRR8316900	Third green stage	1.221
	SRR8316901	Third green stage	1.438
	SRR8316898	Complete white stage	0.077
	SRR8316899	Complete white stage	1.237
	SRR8316903	Complete white stage	0.485
	SRR8316902	Silver flowering stage	0.083
	SRR8316904	Silver flowering stage	0.187
	SRR8316905	Silver flowering stage	0.131
	SRR8316906	Gold flowering stage	0.052
	SRR8316907	Gold flowering stage	0.102
	SRR8316908	Gold flowering stage	0.088
SRP132670	SRR6706286	Control	2.698
	SRR6706287	Light intensity 50%	2.437
	SRR6706288	Light intensity 20%	2.731
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.128
	CNS0095593	Slightly white alabastrum(diploid) 2	1.191
	CNS0095594	Slightly white alabastrum(diploid) 3	0.919
	CNS0095595	Whole white alabastrum(diploid) 2	1.126
	CNS0095596	Whole white alabastrum(diploid) 3	0.117
	CNS0095597	Whole white alabastrum(diploid) 4	0.711
	CNS0095598	Silvery flower (diploied) 1	1.876
	CNS0095599	Silvery flower (diploied) 2	1.980
	CNS0095600	Silvery flower (diploied) 3	0.623
	CNS0095601	Golden flower (diploid) 1	1.018
	CNS0095602	Golden flower (diploid) 2	0.938
	CNS0095603	Golden flower (diploid) 3	0.986
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.341
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.475
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.853
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.312
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.444
	CNS0095610	Silvery flower (tetraploid) 1	0.238
	CNS0095611	Silvery flower (tetraploid) 2	0.166
	CNS0095612	Silvery flower (tetraploid) 3	0.275
	CNS0095613	Golden flower (tetraploid) 1	0.207
	CNS0095614	Golden flower (tetraploid) 2	0.179
	CNS0095615	Golden flower (tetraploid) 3	0.002
CRA001975	CRR073297	Stem 1	1.826
	CRR073298	Stem 2	1.720
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	1.785
	CRR073301	Leaf 2	1.074
	CRR073302	Leaf 3	0.055
	CRR073303	Juvenile bud 1	0.253
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.383
	CRR073306	Third green 1	0.246
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.021
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.300
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.121
	CRR073316	Gold flowering 2	0.565
	CRR073317	Gold flowering 3	0.020
	CRR073318	Tawny withering 1	0.011
	CRR073319	Tawny withering 2	0.052
	CRR073320	Tawny withering 3	0.000