Gene detail

Detail information of GWHGAAZE004533

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009801818.1	7.9825E-158	PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Nicotiana sylvestris]
COG	YP_002432120.1	5E-28	serine/threonine protein kinase
Swissprot	tr\|Q9FL28\|FLS2_ARATH	2E-112	LRR receptor-like serine/threonine-protein kinase FLS2 (Precursor)
trEMBL	tr\|F6HMH8\|F6HMH8_VITVI	1E-163	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55767.1}
TAIR10	AT5G46330.1	6E-99	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	118454723	118456791	-
GWHAAZE00000001	mRNA	118454723	118456791	-
GWHAAZE00000001	exon	118456071	118456791	-
GWHAAZE00000001	exon	118454723	118455150	-
GWHAAZE00000001	CDS	118456071	118456791	-
GWHAAZE00000001	CDS	118454723	118455150	-

Transcript Sequence
>GWHTAAZE004539 ATGTGGATTCTTGTAGGACTCGGTTCTGTTTTCGTATTCCTTATTCTGGTGGTGGCGGTTCCATTACTTGGCCGATACTTAAAAAGGCAAAAACTGAAAACAGTTGAGGAACCCGATTACAGCTTAGCCTTGGCCCTCAAGCGGTTCAATCAAAGGGATTTAGAGAATGCTACTAATTTCTTCAGCGAACATAACATCATTGGCGCGAGCAGTTTGAGCACTGTGTACAAGGGTAGACTGGAAGATGGGGAGATGATAGCTGTAAAGAACTTGAATTTGCATCAGTTTTCGACCGAGTCTGATAAGTCATTCAACAGAGAAGTAAAGATCCTGAACAAATTGAGGCATAGGAATCTAGTGAAGGTACTTGGGTACGCTTGGGAGAGTAAGAAGCTAAAGGCTTTAGTTCTAGAGTACATGGAAAATGGGAACTTGGAGAGCATTATACATGACTCTGCAGTGGATTTATCGATGTGGACATTGTCAAAGAGGATCGACGTTTTGGTCTCTATTGCGAGGGGGTTGGTTTACTTACATTCGGGTTACGATTTGCCCATAGTTCACTGTGATTTGAAGCCTTCGAATATTCTTTTCGATGGAAAGTGGGATGCCCACGTGAGCGATTTTGGGACGGCTCGAATGCTGGGTGTTCACCTGCAAGATGGAAGCAACCTCTCATTGTCATCTGGATTTGAAGGCACAATCGGCTACTTGGCACCAGAGTTTGCATATATGAGGAAAGCTACAACGAAAGTGGACGTGTTCAGCTTTGGTGTAGTAGTGATGGAGTTTCTCACGGGACGGAGACCAACTGGACTCGAAGAACAGAATGGGTTACCAATTACCTTGCCTCAGCTGGTGCAGAAATCACTTGAAAATGGAATCGGCAGCGTACTTCAAATCATCGATCCTCTTCTAGCTTCTAATGTCTCCAAGAATGAGGGTGTAGTAGAAGATCTCCTTAAATTGGCCTTTTCTTGCACCTGCCTGGTTCCCAAGGATCGACCTGACATGGATCAAGTGTTGTCTTCCCTTTCAAAGGTAAGTAAGATTGCATCACCCCATGACCATACTTTTACCACTGAAGATCACAGAATGGGATCAGATCAAAACTGCAATTCAAATGCCAATCGGTACTCGGCCCATTAA

Network for GWHGAAZE004533

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	62	343	8.60E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XII-1

KEGG pathway

KO	Enzyme	pathway	mapID
K13420	FLS2	MAPK signaling pathway - plant	map04016
K13420	FLS2	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.295
	SRR3591706	second leaf	1.044
	SRR3591707	mature leaf	2.504
	SRR3591708	Shoot apex	2.700
	SRR3591709	Stem	4.651
	SRR3591710	White floral bud	3.013
	SRR3591711	White flower	3.609
	SRR3591712	Green floral bud	2.959
	SRR3591713	Yellow flower	1.788
SRP173429	SRR8316895	Juvenile bud stage	1.792
	SRR8316896	Juvenile bud stage	2.260
	SRR8316897	Juvenile bud stage	1.194
	SRR8316894	Third green stage	1.708
	SRR8316900	Third green stage	3.241
	SRR8316901	Third green stage	2.766
	SRR8316898	Complete white stage	0.519
	SRR8316899	Complete white stage	4.660
	SRR8316903	Complete white stage	1.540
	SRR8316902	Silver flowering stage	0.305
	SRR8316904	Silver flowering stage	1.328
	SRR8316905	Silver flowering stage	0.821
	SRR8316906	Gold flowering stage	1.798
	SRR8316907	Gold flowering stage	1.357
	SRR8316908	Gold flowering stage	1.644
SRP132670	SRR6706286	Control	2.402
	SRR6706287	Light intensity 50%	2.627
	SRR6706288	Light intensity 20%	2.641
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.652
	CNS0095593	Slightly white alabastrum(diploid) 2	0.960
	CNS0095594	Slightly white alabastrum(diploid) 3	1.438
	CNS0095595	Whole white alabastrum(diploid) 2	1.136
	CNS0095596	Whole white alabastrum(diploid) 3	0.775
	CNS0095597	Whole white alabastrum(diploid) 4	0.878
	CNS0095598	Silvery flower (diploied) 1	2.065
	CNS0095599	Silvery flower (diploied) 2	1.108
	CNS0095600	Silvery flower (diploied) 3	3.869
	CNS0095601	Golden flower (diploid) 1	1.570
	CNS0095602	Golden flower (diploid) 2	4.447
	CNS0095603	Golden flower (diploid) 3	3.783
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.626
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.174
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.240
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.046
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.843
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.414
	CNS0095610	Silvery flower (tetraploid) 1	3.754
	CNS0095611	Silvery flower (tetraploid) 2	6.080
	CNS0095612	Silvery flower (tetraploid) 3	2.776
	CNS0095613	Golden flower (tetraploid) 1	2.244
	CNS0095614	Golden flower (tetraploid) 2	4.441
	CNS0095615	Golden flower (tetraploid) 3	1.709
CRA001975	CRR073297	Stem 1	2.722
	CRR073298	Stem 2	2.528
	CRR073299	Stem 3	0.406
	CRR073300	Leaf 1	2.550
	CRR073301	Leaf 2	2.514
	CRR073302	Leaf 3	0.392
	CRR073303	Juvenile bud 1	1.493
	CRR073304	Juvenile bud 2	0.900
	CRR073305	Juvenile bud 3	0.693
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.018
	CRR073308	Third green 3	0.142
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.152
	CRR073311	Second white 3	0.093
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.481
	CRR073317	Gold flowering 3	0.222
	CRR073318	Tawny withering 1	0.946
	CRR073319	Tawny withering 2	0.347
	CRR073320	Tawny withering 3	0.172