Gene detail

Detail information of GWHGAAZE004537

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010652491.1	3.1249E-134	PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X4 [Vitis vinifera]
trEMBL	tr\|D7U3H4\|D7U3H4_VITVI	1E-134	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI37293.3}
TAIR10	AT3G58130.2	2E-85	N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	118530268	118535041	+
GWHAAZE00000001	mRNA	118530268	118535041	+
GWHAAZE00000001	exon	118530268	118530291	+
GWHAAZE00000001	exon	118530851	118530999	+
GWHAAZE00000001	exon	118531098	118531158	+
GWHAAZE00000001	exon	118532106	118532193	+
GWHAAZE00000001	exon	118532532	118532693	+
GWHAAZE00000001	exon	118532986	118533030	+
GWHAAZE00000001	exon	118533118	118533198	+
GWHAAZE00000001	exon	118533421	118533488	+
GWHAAZE00000001	exon	118534441	118534489	+
GWHAAZE00000001	exon	118534585	118534745	+
GWHAAZE00000001	exon	118534972	118535041	+
GWHAAZE00000001	five_prime_UTR	118530268	118530291	+
GWHAAZE00000001	five_prime_UTR	118530851	118530887	+
GWHAAZE00000001	CDS	118530888	118530999	+
GWHAAZE00000001	CDS	118531098	118531158	+
GWHAAZE00000001	CDS	118532106	118532193	+
GWHAAZE00000001	CDS	118532532	118532693	+
GWHAAZE00000001	CDS	118532986	118533030	+
GWHAAZE00000001	CDS	118533118	118533198	+
GWHAAZE00000001	CDS	118533421	118533488	+
GWHAAZE00000001	CDS	118534441	118534489	+
GWHAAZE00000001	CDS	118534585	118534745	+
GWHAAZE00000001	CDS	118534972	118535041	+

Transcript Sequence
>GWHTAAZE004543 GTTCCACACTTCTCTCAATAGACGCAATATGCTCTTTCAATTTGTTTTAGGAGCATGCTAGATGGCTTGGCTCATGATCATTGTGTCCGTGGTGGTACTCTGGGTGGCTTCTCTCTGCAAAATTCTCCAAGCATCCTTCTCTCCTTCCAAAGATAATTTCTTGAGTAATGCTGATGGAGTGCTTCCCAGGAGAAAAATAATGCTGGTTATTGCCCACCCTGATGATGAGTCTATGTTCTTTACACCAACAATTAATTACTTGACTTCAAGGGGGCACAGTATATACATATTGTGCATATCCACTGGTAATATGCTATTACTGTGGATATCTGGGATGCGATTTTCCTGTTTCATTCCCAGATGCATAAATTTTTATGGTTTTTTTTCTTTAATATATGCTGTATTATTTGTTATGTTAGGTAATGCAGATGGCATGGGAGACATTAGACAAGAAGAGCTCTATCAGGCTTCTGCAATCCTTAAGGTTCCACTCCATCAAGTAAAGATCCTGGACCATCCAGATCTGCAGGATGGTTTTGGCAAAGTGTGGAACTGTAGTTTATTGTCAAGGATTATTGAAGAGGAAATCGATACTCATGCCATTGACCTGATTATTACTTTCGATAACTATGGTGTTTCTGGTCATTGTAATCATTGTGACGTAAGTCAAGGGGTACGAAGGCTCTTGCATACTACTTCACAAAGAAATATCGAAGCCTGGGAGCTTGTGAGTACTAACCTACTACGCAAGTATAGTGGACCAGTTGATATATGGCTGTCCTTGTTATATGCCATGAGTTCTCCCAACGGACAGATCCATTGCTTGCTGAACCAACATCCTTATAAAAGCTATGCTGCAATGGCACAACATATGAGCCAATGGGTTTGGTTTAGGAAGCTTTTTGTTGCCTTTTCCAGTTATACTTTTGTGAACACCCTTAGGAAGATCAACAACTAG

Network for GWHGAAZE004537

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02585.18	PIG-L	47	207	4.20E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03434	PIGL	Metabolic pathways	map01100
K03434	PIGL	Glycosylphosphatidylinositol	map00563

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.040
	SRR3591706	second leaf	5.428
	SRR3591707	mature leaf	5.792
	SRR3591708	Shoot apex	12.950
	SRR3591709	Stem	15.320
	SRR3591710	White floral bud	11.178
	SRR3591711	White flower	8.938
	SRR3591712	Green floral bud	16.454
	SRR3591713	Yellow flower	4.924
SRP173429	SRR8316895	Juvenile bud stage	9.292
	SRR8316896	Juvenile bud stage	16.391
	SRR8316897	Juvenile bud stage	7.462
	SRR8316894	Third green stage	7.699
	SRR8316900	Third green stage	17.052
	SRR8316901	Third green stage	17.710
	SRR8316898	Complete white stage	5.845
	SRR8316899	Complete white stage	21.117
	SRR8316903	Complete white stage	7.843
	SRR8316902	Silver flowering stage	4.150
	SRR8316904	Silver flowering stage	4.298
	SRR8316905	Silver flowering stage	1.870
	SRR8316906	Gold flowering stage	8.151
	SRR8316907	Gold flowering stage	8.938
	SRR8316908	Gold flowering stage	6.377
SRP132670	SRR6706286	Control	7.773
	SRR6706287	Light intensity 50%	7.279
	SRR6706288	Light intensity 20%	7.869
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.811
	CNS0095593	Slightly white alabastrum(diploid) 2	16.189
	CNS0095594	Slightly white alabastrum(diploid) 3	20.974
	CNS0095595	Whole white alabastrum(diploid) 2	15.106
	CNS0095596	Whole white alabastrum(diploid) 3	17.798
	CNS0095597	Whole white alabastrum(diploid) 4	14.927
	CNS0095598	Silvery flower (diploied) 1	10.169
	CNS0095599	Silvery flower (diploied) 2	8.973
	CNS0095600	Silvery flower (diploied) 3	6.138
	CNS0095601	Golden flower (diploid) 1	4.714
	CNS0095602	Golden flower (diploid) 2	5.023
	CNS0095603	Golden flower (diploid) 3	5.094
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.983
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.295
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.237
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.096
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.949
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.401
	CNS0095610	Silvery flower (tetraploid) 1	8.084
	CNS0095611	Silvery flower (tetraploid) 2	5.589
	CNS0095612	Silvery flower (tetraploid) 3	7.241
	CNS0095613	Golden flower (tetraploid) 1	4.384
	CNS0095614	Golden flower (tetraploid) 2	4.218
	CNS0095615	Golden flower (tetraploid) 3	1.508
CRA001975	CRR073297	Stem 1	5.669
	CRR073298	Stem 2	4.918
	CRR073299	Stem 3	3.951
	CRR073300	Leaf 1	6.570
	CRR073301	Leaf 2	5.152
	CRR073302	Leaf 3	3.593
	CRR073303	Juvenile bud 1	2.855
	CRR073304	Juvenile bud 2	2.498
	CRR073305	Juvenile bud 3	3.377
	CRR073306	Third green 1	0.376
	CRR073307	Third green 2	1.498
	CRR073308	Third green 3	1.659
	CRR073309	Second white 1	1.235
	CRR073310	Second white 2	1.459
	CRR073311	Second white 3	1.107
	CRR073312	Silver flowering 1	0.119
	CRR073313	Silver flowering 2	0.282
	CRR073314	Silver flowering 3	0.517
	CRR073315	Gold flowering 1	3.304
	CRR073316	Gold flowering 2	6.663
	CRR073317	Gold flowering 3	2.089
	CRR073318	Tawny withering 1	7.621
	CRR073319	Tawny withering 2	5.624
	CRR073320	Tawny withering 3	5.644