Gene detail

Detail information of GWHGAAZE004541

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007158936.1	0	hypothetical protein PHAVU_002G194200g [Phaseolus vulgaris]
COG	YP_008432137.1	8E-117	Minichromosome maintenance protein MCM
Swissprot	tr\|Q43704\|MCM31_MAIZE	0	DNA replication licensing factor MCM3 homolog 1
trEMBL	tr\|V7CNV8\|V7CNV8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW30930.1}
TAIR10	AT5G46280.1	0	Minichromosome maintenance (MCM2/3/5) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	118555691	118561908	+
GWHAAZE00000001	mRNA	118555691	118561908	+
GWHAAZE00000001	exon	118555691	118555756	+
GWHAAZE00000001	exon	118555846	118555964	+
GWHAAZE00000001	exon	118556567	118556775	+
GWHAAZE00000001	exon	118558082	118558212	+
GWHAAZE00000001	exon	118558293	118558531	+
GWHAAZE00000001	exon	118558653	118558889	+
GWHAAZE00000001	exon	118559049	118559203	+
GWHAAZE00000001	exon	118559300	118559508	+
GWHAAZE00000001	exon	118559589	118559754	+
GWHAAZE00000001	exon	118559830	118560029	+
GWHAAZE00000001	exon	118560143	118560301	+
GWHAAZE00000001	exon	118560392	118560484	+
GWHAAZE00000001	exon	118560728	118560897	+
GWHAAZE00000001	exon	118561055	118561111	+
GWHAAZE00000001	exon	118561211	118561352	+
GWHAAZE00000001	exon	118561465	118561559	+
GWHAAZE00000001	exon	118561644	118561908	+
GWHAAZE00000001	CDS	118555691	118555756	+
GWHAAZE00000001	CDS	118555846	118555964	+
GWHAAZE00000001	CDS	118556567	118556775	+
GWHAAZE00000001	CDS	118558082	118558212	+
GWHAAZE00000001	CDS	118558293	118558531	+
GWHAAZE00000001	CDS	118558653	118558889	+
GWHAAZE00000001	CDS	118559049	118559203	+
GWHAAZE00000001	CDS	118559300	118559508	+
GWHAAZE00000001	CDS	118559589	118559754	+
GWHAAZE00000001	CDS	118559830	118560029	+
GWHAAZE00000001	CDS	118560143	118560301	+
GWHAAZE00000001	CDS	118560392	118560484	+
GWHAAZE00000001	CDS	118560728	118560897	+
GWHAAZE00000001	CDS	118561055	118561111	+
GWHAAZE00000001	CDS	118561211	118561352	+
GWHAAZE00000001	CDS	118561465	118561521	+
GWHAAZE00000001	three_prime_UTR	118561522	118561559	+
GWHAAZE00000001	three_prime_UTR	118561644	118561908	+

Transcript Sequence
>GWHTAAZE004547 ATGGACATCAGCGAGGAACTCAGGCTATCTCACAAGCGTACATTCCTCAAGTTCTTCGATCACGATGAACGGAAGAACATTTTCGCCGACGAGATCAGAAACATGATCCACCACAAACGGCGCCGTTTGATTATAAATCTCGCTCATCTCTTCAACCACGAGGAGGGCGACGATCTGGCTCGCAGGCTCCTCAGAAATCCGAGTGAATACATGCAATCGTTGAGCGATGCGGTTACTGACGTTGCTCGCAGCATTGATCCCAAATACCTGAAGGAAGGAGAGCAAGTTCTTGTTGGATTTGAGGGTCCTTTTGTTTCGCGTCGAGTTACGCCTAGAGATCTGCTCTCTAGCTTCATTGGTTCACTGGTCTGTGTCGAGGGCATTGTTACTAAATGTTCTCTTGTAAGGCCAAAGGTTGTTAAAAGTGTGCACTTCTGCCCTTCAACGGGGAACTTTACTTCTCGTGAATATCGAGATATTACATCCAACATGGGTTTGCCCACTGGTTCTGTTTATCCAACACGGGATGATAATGGCAATTTGTTAGTGACTGAATATGGCTTGTGCAAATACAAAGATCACCAAACAATATCAATGCAAGAAGTGCCTGAGAATTCTGCTCCTGGTCAACTTCCACGAACAGTTGATATCATAGTCGAGGATGACCTTGTGGATTCATGCAAGCCTGGAGACCGTGTTGCAATTGTTGGAATATACAAAGCTCTTCCCGGAAAAAGCAAGGGCAGTGTAAATGGGGTATTCAGGACTGTCCTCATAGCTAACAATGTCTCACTCCTCAACAAAGAGGCCAATGCCCCAATCTACACTCCTGAAGACATTAGCAACATTAAAAAGATATCTGAGAGGGATGATGCATTTGACTTACTTGCTAATTCACTTGCACCTTCTATATATGGGCATTCATGGATAAAGAAAGCAGTGATTCTATTGATGCTTGGTGGAACAGAGAAGAACTTAAAAAACGGGACCCACTTGCGAGGTGATATAAACATGATGATGGTTGGTGATCCTTCTGTTGCCAAGTCACAGCTGCTTAGAGCAATTATGAATATTTCTCCTTTGGCCATATCAACAACTGGTCGGGGTTCTTCTGGAGTTGGATTGACAGCTGCAGTTACCTCTGATCAAGAAACAGGAGAAAGAAGGCTAGAAGCTGGAGCAATGGTTCTTGCAGATCGAGGTGTTATTTGTATCGATGAGTTTGACAAGATGAACGATCAAGATCGTGTTGCTATACACGAAGTTATGGAACAGCAGACTGTAACAATTGCCAAAGCTGGTATCCACGCCTCTTTGAATGCTCGATGCAGTGTTGTTGCAGCTGCAAATCCTATATATGGAACTTATGACCGTTCGTTAACTCCAACAAAGAACATTGGGCTCCCAGACTCCTTACTGTCTCGTTTTGATCTACTATTTATCGTATTGGACCAAATGGATCCTGGCATCGACCGTCAAATCTCAGATCACGTCTTGCGTATGCATCGGTTTCGTTCTGCAGTTGATGGAGGTGCAACCTTAGATGGAAGCTCAAGATATGGTGGGGAGGATGAAACTGGTACAGGTTCATCTGTCTATGTCAAGTATAACAGAATGCTCCATGGGAGAAAATCAGACAGGGGTCGAAAACGTGATACTCTCACAATCAAGTTTCTAAAGAAATACATTCACTATGCAAAGCATAGGATTCAACCGGATCTGACTGATGAGCCCAATTCTGGCCTCGGTGCTGTTGTGCGTCCATTATCTTACTTGTACCTTAGGTTTGCAAGGTGGTCTTATGCTGATAATGAAAATCTTCATGAACAGGCATCTGATCAAATTGCAACTGCATATGCAGAACTCAGAAATGCCAGTTCAAATGCTAAGACAGGGGGAGGAACTCTTCCAATCACTGCCAGAACCTTGGAAACCATAATAAGGCTATCTACTGCCCATGCCAAACTGAAGTTGAGCAGACAGGTTTTGAAATCTGATGTTGAAGCTGCTCTTAAAGTTCTAAACTTTGCCATATATCATAAAGAGCTAACTGAGATGGAGGAGCGTGAGCAGGAAAGGGAGAATGAAGCAGAAAGGCAAAGGAAAGCCGGCCATGATGGCAGCAACAATAGAAATGACCATGATGGTGGCGGTGCGACAGAACCAATGGATGTAGACAACCCTCGTGCATCCCAACCTAACCCAGAGAGAATAGAAGCATTTAAATCTACACTTGGGAAACATAGACATGCACAGCACTTGGAACAAATGTCTATTGGCGATATCGAAGGGGTTGTCAACACTAGGGCTGATGTACCTTACTTAAGGGCAGAGGTTATGTTCTTGTTGGAGAAAATGCGCGATGATGGGAGGCTAATGATTGCCGGGGATATAGTGTATTTCACTTGATAAAGCATTGGACCACCTCCAGTTGCTGTAGTTTGACGGTACAGCATATGTTTGCAGGAGCAATGGGACGGATTCATTTGATTGGAAAATTACCGAGCTTGGGGCTTCTACGTTCTATATGTCAGGAGCTAGTTTGACTAGAGCTAACAAGGCATTATTGGAAGCACAATCTGGACCTTCTATTTATGGACTGTTTTAGATATTCTTCGTATTTCATAATTCAAATTGTTCAAAAAAGCCATGAAAGCTCAGTCTTCTAAACTGAAAAGTGATTACATCAAGTATTTGTCTGATTGGACTTCG

Network for GWHGAAZE004541

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14551.7	MCM_N	13	92	3.30E-13
PF17207.4	MCM_OB	112	242	1.80E-30
PF00493.24	MCM	280	502	1.70E-95
PF17855.2	MCM_lid	593	675	3.10E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02541	MCM3	DNA replication	map03030
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113

Gene Ontology

GO term	Ontology	Name
GO:0006270	biological_process	DNA replication initiation
GO:0042555	cellular_component	MCM complex
GO:0003677	molecular_function	DNA binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.797
	SRR3591706	second leaf	3.802
	SRR3591707	mature leaf	0.530
	SRR3591708	Shoot apex	42.180
	SRR3591709	Stem	3.855
	SRR3591710	White floral bud	1.515
	SRR3591711	White flower	1.023
	SRR3591712	Green floral bud	2.194
	SRR3591713	Yellow flower	0.364
SRP173429	SRR8316895	Juvenile bud stage	8.939
	SRR8316896	Juvenile bud stage	10.643
	SRR8316897	Juvenile bud stage	4.709
	SRR8316894	Third green stage	3.547
	SRR8316900	Third green stage	4.221
	SRR8316901	Third green stage	2.954
	SRR8316898	Complete white stage	0.623
	SRR8316899	Complete white stage	3.691
	SRR8316903	Complete white stage	1.034
	SRR8316902	Silver flowering stage	0.649
	SRR8316904	Silver flowering stage	0.754
	SRR8316905	Silver flowering stage	0.252
	SRR8316906	Gold flowering stage	0.786
	SRR8316907	Gold flowering stage	1.053
	SRR8316908	Gold flowering stage	1.293
SRP132670	SRR6706286	Control	3.876
	SRR6706287	Light intensity 50%	4.371
	SRR6706288	Light intensity 20%	5.027
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.192
	CNS0095593	Slightly white alabastrum(diploid) 2	5.116
	CNS0095594	Slightly white alabastrum(diploid) 3	5.460
	CNS0095595	Whole white alabastrum(diploid) 2	3.175
	CNS0095596	Whole white alabastrum(diploid) 3	2.590
	CNS0095597	Whole white alabastrum(diploid) 4	2.623
	CNS0095598	Silvery flower (diploied) 1	5.216
	CNS0095599	Silvery flower (diploied) 2	9.247
	CNS0095600	Silvery flower (diploied) 3	3.033
	CNS0095601	Golden flower (diploid) 1	2.503
	CNS0095602	Golden flower (diploid) 2	1.813
	CNS0095603	Golden flower (diploid) 3	1.076
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.916
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.684
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.320
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.036
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.649
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.507
	CNS0095610	Silvery flower (tetraploid) 1	1.057
	CNS0095611	Silvery flower (tetraploid) 2	1.625
	CNS0095612	Silvery flower (tetraploid) 3	1.540
	CNS0095613	Golden flower (tetraploid) 1	0.153
	CNS0095614	Golden flower (tetraploid) 2	0.274
	CNS0095615	Golden flower (tetraploid) 3	0.282
CRA001975	CRR073297	Stem 1	18.792
	CRR073298	Stem 2	14.036
	CRR073299	Stem 3	19.406
	CRR073300	Leaf 1	3.716
	CRR073301	Leaf 2	3.409
	CRR073302	Leaf 3	2.738
	CRR073303	Juvenile bud 1	2.742
	CRR073304	Juvenile bud 2	1.642
	CRR073305	Juvenile bud 3	3.643
	CRR073306	Third green 1	0.459
	CRR073307	Third green 2	0.466
	CRR073308	Third green 3	1.071
	CRR073309	Second white 1	0.366
	CRR073310	Second white 2	0.434
	CRR073311	Second white 3	0.842
	CRR073312	Silver flowering 1	0.592
	CRR073313	Silver flowering 2	0.512
	CRR073314	Silver flowering 3	0.160
	CRR073315	Gold flowering 1	1.258
	CRR073316	Gold flowering 2	2.755
	CRR073317	Gold flowering 3	1.072
	CRR073318	Tawny withering 1	12.505
	CRR073319	Tawny withering 2	9.351
	CRR073320	Tawny withering 3	18.261