Gene detail

Detail information of GWHGAAZE004553

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU33358.1	9.7825E-110	hypothetical protein MIMGU_mgv1a002872mg [Erythranthe guttata]
Swissprot	tr\|Q93Y37\|MNS3_ARATH	4E-102	Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3
trEMBL	tr\|A0A022R171\|A0A022R171_ERYGU	4E-110	alpha-1,2-Mannosidase {ECO:0000256\|RuleBase:RU361193}
TAIR10	AT1G30000.1	1E-87	alpha-mannosidase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	118702755	118713014	-
GWHAAZE00000001	mRNA	118702755	118713014	-
GWHAAZE00000001	exon	118712828	118713014	-
GWHAAZE00000001	exon	118712610	118712752	-
GWHAAZE00000001	exon	118705977	118706098	-
GWHAAZE00000001	exon	118703890	118704034	-
GWHAAZE00000001	exon	118703581	118703778	-
GWHAAZE00000001	exon	118703278	118703423	-
GWHAAZE00000001	exon	118703120	118703161	-
GWHAAZE00000001	exon	118702755	118703052	-
GWHAAZE00000001	CDS	118712828	118713014	-
GWHAAZE00000001	CDS	118712610	118712752	-
GWHAAZE00000001	CDS	118705977	118706098	-
GWHAAZE00000001	CDS	118703890	118704034	-
GWHAAZE00000001	CDS	118703581	118703778	-
GWHAAZE00000001	CDS	118703278	118703423	-
GWHAAZE00000001	CDS	118703120	118703161	-
GWHAAZE00000001	CDS	118702755	118703052	-

Transcript Sequence
>GWHTAAZE004559 ATGATTGGTAGCTTAGCATATCTCATGCTAACTTATGCAAGTTCCGATCATTCTATTTCTGATGATCTAGCAAAAGATAATTGGTCTAAGGAAGGACATGGGCTCATTATGGATGGTGGTAGCCGATTTGGGAGGTTCAGGAGGAAACCACAAAAGCTTCCTTCTAGGCTATCTCTTAACAGATTAGTTCAGAAGGCATTTGTTCATGCACGGTCTGGCTATAAAAACTATGCAATGGGTTATGATGAACTTTTGCCACTGAACCAGAAAGGAGTTGATGGTTTAGGAGGTCTAGGTGCTATTGTTGTGGATGCTTTAGACACAGCCATGGTCGAGTTCAATTATCTTAGTTTTCTTACTGGTGATCCAAAGTACAGTTTGGAGTCAATGAAGGTTTTGGAGCATATGAAGAATCTTTCAAAAGCAGAGGGCTTGGTTCTTATCTATATAAGGCTCCCCTGGTTCGGACATCCGTATTTCACAACTGTAACAATCTTTGATCTTGAGCTGATGCTTATCGGGTATAAATTGAAGCATTGGTTGATGCCTGTACTAAATGCTCACAAGGCTTTAACATCACTGGTCATTCTATTAGACGTGTGTTTTCTGTCTGGAACTCTAGCACTTGATGCCACCAAAGGCATTACGAAGGCCAAGGCTGTAAAAGACAATTTGCTCACTGTTGAAGACCTAGAAAATCTGAAGCTTGCAGAAGATTTGGTTAGAACATGCTTTGAGATGTATTCTGTTACTTCCACTGGTCTTGCTCCTGAAATTGCTTACTTCAATGTGAAGGGAAACGAAGGAGGGCTCGATGGTGGGAACAAGCACTCAAAATATGTAAATGGCATAATAATTAAAGTTGCTGACCGTCAAAATCTTTTGCATCCTGAAACTGTTGAATCGTTGTTTGTCTTGTATCGTATAACTGGAGATCCAAAATATCGTAAATGGGGTTGGGAGATCTTTAAGGCATTTGAGAAATATCGTAAATGGGGTTGGGAGATCTTTAAGGCATTTGAGAAGTATGCAAAAGTTGATTCTGGAGGTCACTGTTCTCTAGATGATGTCACCATGCTTCCTCCACAAAAAAGAGACAAGATGGAGGCCTTTTTCTTGGGTGAAACACTGAAGTATTTATACTTGCTGTTTGGAGACAGAAATCTTATTCCATTGGACAAGTTCGTTTTCAACACAGAAAGCTCATCCTTTTCCTATAATAAACACTACAAAAAGATGATACAGCACTTCCATTGCACCGGAAGCATTTTTGCGATTTAA

Network for GWHGAAZE004553

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01532.21	Glyco_hydro_47	66	111	3.80E-10
PF01532.21	Glyco_hydro_47	200	329	1.50E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K23741	MAN1B, MNS3	Metabolic pathways	map01100
		N-Glycan biosynthesis	map00510
		Various types of N-glycan biosynthesis	map00513
		Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0016020	cellular_component	membrane
GO:0003824	molecular_function	catalytic activity
GO:0004571	molecular_function	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.999
	SRR3591706	second leaf	0.456
	SRR3591707	mature leaf	0.572
	SRR3591708	Shoot apex	0.911
	SRR3591709	Stem	1.337
	SRR3591710	White floral bud	0.165
	SRR3591711	White flower	0.434
	SRR3591712	Green floral bud	0.344
	SRR3591713	Yellow flower	0.393
SRP173429	SRR8316895	Juvenile bud stage	2.528
	SRR8316896	Juvenile bud stage	3.205
	SRR8316897	Juvenile bud stage	1.481
	SRR8316894	Third green stage	1.840
	SRR8316900	Third green stage	2.612
	SRR8316901	Third green stage	2.361
	SRR8316898	Complete white stage	0.569
	SRR8316899	Complete white stage	3.181
	SRR8316903	Complete white stage	1.756
	SRR8316902	Silver flowering stage	0.540
	SRR8316904	Silver flowering stage	1.157
	SRR8316905	Silver flowering stage	0.506
	SRR8316906	Gold flowering stage	1.270
	SRR8316907	Gold flowering stage	0.864
	SRR8316908	Gold flowering stage	1.295
SRP132670	SRR6706286	Control	0.688
	SRR6706287	Light intensity 50%	1.265
	SRR6706288	Light intensity 20%	1.381
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.382
	CNS0095593	Slightly white alabastrum(diploid) 2	1.423
	CNS0095594	Slightly white alabastrum(diploid) 3	0.754
	CNS0095595	Whole white alabastrum(diploid) 2	0.877
	CNS0095596	Whole white alabastrum(diploid) 3	0.354
	CNS0095597	Whole white alabastrum(diploid) 4	1.392
	CNS0095598	Silvery flower (diploied) 1	1.454
	CNS0095599	Silvery flower (diploied) 2	1.476
	CNS0095600	Silvery flower (diploied) 3	1.456
	CNS0095601	Golden flower (diploid) 1	0.985
	CNS0095602	Golden flower (diploid) 2	1.528
	CNS0095603	Golden flower (diploid) 3	1.308
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.413
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.149
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.324
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.274
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.119
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.345
	CNS0095610	Silvery flower (tetraploid) 1	0.062
	CNS0095611	Silvery flower (tetraploid) 2	0.001
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.039
	CNS0095614	Golden flower (tetraploid) 2	0.123
	CNS0095615	Golden flower (tetraploid) 3	0.017
CRA001975	CRR073297	Stem 1	1.069
	CRR073298	Stem 2	0.683
	CRR073299	Stem 3	0.030
	CRR073300	Leaf 1	1.153
	CRR073301	Leaf 2	0.675
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.086
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.047
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.080
	CRR073316	Gold flowering 2	0.262
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.129
	CRR073319	Tawny withering 2	0.198
	CRR073320	Tawny withering 3	0.000