Detail information of GWHGAAZE004571


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrNP_001239766.16.68915E-75uncharacterized protein LOC100780826 [Glycine max]
Swissprottr|Q9C6Z3|ODPB2_ARATH1E-76Pyruvate dehydrogenase E1 component subunit beta-2, chloroplastic (Precursor)
trEMBLtr|E5RPJ6|E5RPJ6_SOYBN2E-75Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G27260.1}
TAIR10AT1G30120.16E-63pyruvate dehydrogenase E1 beta

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene119036349119036690+
GWHAAZE00000001mRNA119036349119036690+
GWHAAZE00000001exon119036349119036690+
GWHAAZE00000001CDS119036349119036690+
Transcript Sequence

Network for GWHGAAZE004571

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02780.21Transketolase_C11041.20E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00162PDHB, pdhB Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Glycolysis / Gluconeogenesismap00010
Citrate cyclemap00020
Pyruvate metabolismmap00620
HIF-1 signaling pathwaymap04066
Glucagon signaling pathwaymap04922

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf28.039
SRR3591706second leaf56.605
SRR3591707mature leaf5.300
SRR3591708Shoot apex53.431
SRR3591709Stem13.677
SRR3591710White floral bud14.138
SRR3591711White flower8.331
SRR3591712Green floral bud54.914
SRR3591713Yellow flower14.808
SRP173429 SRR8316895Juvenile bud stage 35.090
SRR8316896Juvenile bud stage 53.075
SRR8316897Juvenile bud stage 22.335
SRR8316894Third green stage 16.990
SRR8316900Third green stage 77.186
SRR8316901Third green stage 81.468
SRR8316898Complete white stage 18.241
SRR8316899Complete white stage 57.460
SRR8316903Complete white stage 22.522
SRR8316902Silver flowering stage8.418
SRR8316904Silver flowering stage10.911
SRR8316905Silver flowering stage5.670
SRR8316906Gold flowering stage 11.260
SRR8316907Gold flowering stage 10.469
SRR8316908Gold flowering stage 9.833
SRP132670SRR6706286Control36.609
SRR6706287Light intensity 50%47.472
SRR6706288Light intensity 20%53.321
CNP0000432CNS0095592Slightly white alabastrum(diploid) 159.361
CNS0095593Slightly white alabastrum(diploid) 271.466
CNS0095594Slightly white alabastrum(diploid) 357.250
CNS0095595Whole white alabastrum(diploid) 266.459
CNS0095596Whole white alabastrum(diploid) 376.312
CNS0095597Whole white alabastrum(diploid) 457.449
CNS0095598Silvery flower (diploied) 122.939
CNS0095599Silvery flower (diploied) 226.216
CNS0095600Silvery flower (diploied) 330.314
CNS0095601Golden flower (diploid) 125.892
CNS0095602Golden flower (diploid) 231.813
CNS0095603Golden flower (diploid) 331.089
CNS0095604Slightly white alabastrum(tetraploid) 168.748
CNS0095605Slightly white alabastrum(tetraploid) 262.156
CNS0095606Slightly white alabastrum(tetraploid) 380.784
CNS0095607Whole white alabastrum(tetraploid) 157.004
CNS0095608Whole white alabastrum(tetraploid) 260.632
CNS0095609Whole white alabastrum(tetraploid) 383.467
CNS0095610Silvery flower (tetraploid) 133.906
CNS0095611Silvery flower (tetraploid) 230.373
CNS0095612Silvery flower (tetraploid) 325.863
CNS0095613Golden flower (tetraploid) 140.529
CNS0095614Golden flower (tetraploid) 245.339
CNS0095615Golden flower (tetraploid) 321.805
CRA001975CRR073297Stem 157.127
CRR073298Stem 256.404
CRR073299Stem 354.169
CRR073300Leaf 182.629
CRR073301Leaf 284.869
CRR073302Leaf 376.899
CRR073303Juvenile bud 171.146
CRR073304Juvenile bud 281.682
CRR073305Juvenile bud 365.520
CRR073306Third green 134.994
CRR073307Third green 231.581
CRR073308Third green 327.611
CRR073309Second white 127.206
CRR073310Second white 213.988
CRR073311Second white 311.256
CRR073312Silver flowering 117.757
CRR073313Silver flowering 237.475
CRR073314Silver flowering 322.488
CRR073315Gold flowering 123.787
CRR073316Gold flowering 218.333
CRR073317Gold flowering 327.022
CRR073318Tawny withering 148.727
CRR073319Tawny withering 229.768
CRR073320Tawny withering 351.980