Gene detail

Detail information of GWHGAAZE004572

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009603531.1	PREDICTED: probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Nicotiana tomentosiformis]
Swissprot	tr\|Q9LRR7\|NCED3_ARATH	9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic (Precursor)
trEMBL	tr\|J7G3X8\|J7G3X8_TOBAC	9-cis-epoxycarotenoid dioxygenase 3 protein family isoform 2 {ECO:0000313\|EMBL:AFP57678.1}
TAIR10	AT3G14440.1	nine-cis-epoxycarotenoid dioxygenase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	119073078	119074610	-
GWHAAZE00000001	mRNA	119073078	119074610	-
GWHAAZE00000001	exon	119073274	119074610	-
GWHAAZE00000001	exon	119073078	119073243	-
GWHAAZE00000001	CDS	119073274	119074610	-
GWHAAZE00000001	CDS	119073078	119073243	-

Transcript Sequence
>GWHTAAZE004578 ATGCTAGAAGGCGCGTTAATCTCACTCCACTCCCACCTCCCCAAAACCTCCGATCCACGTGTCCAACTCTCCGGTAACTTCGCCCCTGTCCCCGAGCAACCCCTAGTTCACCACCACTTACCCGTCACCGGCACAATCCCGGATTGCATTGACGGCGTTTACCTCCGTAACGGTGCAAACCCCCTTTTCCAACCCCTCTCAGCCCACCACCTCTTTGACGGAGACGGAATGATCCACGCCGTCAAAATAAACAGCAAATCCGTTAGTTACTCCTGCCGCTTCACTGAAACTCAGCGCCTCATTCAAGAGCGTAAGCTGGGCCGCCCAGTTTTTCCCAAGCCAATCGGAGAGCTTCACGGCCATTCGGGTATAGCCCGACTCGCCCTGTTTTATGCACGTGGACTATTCGGGCTTATTGATTTTAACCATGGAACCGGAGTTGCAAATGCCGGTTTGGTCTATTTTAACGGCCGTTTACTTGCGATGTCCGAGGATGATTTGCCTTATCAAGTTAATATATCACCCGCAGGAGACCTTAGGACAACCGGGCAGTACGATTTTGATGGTCAGCTCCGATCCGCAATGATCGCCCACCCGAAACTCGATCCAGTAACCGGGGAGATGTTCGCGCTTAGTTATGACGTCGTGAAGAAACCGTATCTCAAGTACTTTAAATTCTCTAGAGATGGAAAAAAGTCTGCTGACGTGGAGATACCGATAGTCGGGCCCACAATGACGCATGATTTTGCCATAACTGAGAACTACGTCGTAATACCGGACCAGCAGGTGGTGTTCAATTTAAAAGAAATGATTAAAGGCGGTTCCCCGGTGATTTACGATGAAGAAAAGATGTCCCGGTTCGGGGTTTTATCGAAACACTCAAAAAATGGTGATGATATAATATGGGTGGACTCGCCGGACACGTTTTGTTTCCATTTATGGAATGCTTGGGAAGAGACGCATTCTCCCGATGAAGTGGTGGTTATCGGTTCCTGTATGACCCCACCCGACTCCATTTTTAATGAATCCGATGAAAATTTGAAGAGTGTGTTGTCTGAAATACGGATAAATATTACAACTGGAAAATCCACGAGGCGTCCAATAATTAATGTGAATAATAATCACGTGAATTTAGAGGCAGGTATGGTGAACCGGAATTTCTTAGGGCGCAAAACTCGATATGCTTATTTGGCGATAGCTGAGCCGTGGCCAAAAGTGTCGGGTTTCGCTAAGGTGGATTTACAGAATGGTGATGTGGAAAAATTTATGTATGGGGATAGGAGGTACGGGGGCGAGCCCTTCTTTTTACCTATAGATGATGATGATGATGATGATGAGTACGTAATGTCATTTGTACATGACGAGGAGAAATGGGAGTCAGAGCTTTTGATAGTAAATGCGAAGAGTATGCGGTTGGAGGCTTCAGTTAAGTTGCCATCTAGGGTTCCGTATGGCTTTCATGGGACGTTTGTGAGTTCGAAAGAGTTGGATGAGCAAGTGTAG

Network for GWHGAAZE004572

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03055.16	RPE65	29	492	5.00E-114

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09840	NCED	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Carotenoid biosynthesis	map00906

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016702	molecular_function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.546
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.333
	SRR3591709	Stem	4.925
	SRR3591710	White floral bud	6.716
	SRR3591711	White flower	3.428
	SRR3591712	Green floral bud	0.181
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.720
	SRR8316896	Juvenile bud stage	0.592
	SRR8316897	Juvenile bud stage	0.049
	SRR8316894	Third green stage	0.726
	SRR8316900	Third green stage	0.551
	SRR8316901	Third green stage	1.871
	SRR8316898	Complete white stage	2.841
	SRR8316899	Complete white stage	6.078
	SRR8316903	Complete white stage	7.657
	SRR8316902	Silver flowering stage	3.150
	SRR8316904	Silver flowering stage	1.823
	SRR8316905	Silver flowering stage	1.071
	SRR8316906	Gold flowering stage	0.996
	SRR8316907	Gold flowering stage	0.754
	SRR8316908	Gold flowering stage	1.065
SRP132670	SRR6706286	Control	0.723
	SRR6706287	Light intensity 50%	1.963
	SRR6706288	Light intensity 20%	0.830
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.278
	CNS0095593	Slightly white alabastrum(diploid) 2	2.030
	CNS0095594	Slightly white alabastrum(diploid) 3	3.935
	CNS0095595	Whole white alabastrum(diploid) 2	2.853
	CNS0095596	Whole white alabastrum(diploid) 3	0.271
	CNS0095597	Whole white alabastrum(diploid) 4	5.181
	CNS0095598	Silvery flower (diploied) 1	7.542
	CNS0095599	Silvery flower (diploied) 2	14.200
	CNS0095600	Silvery flower (diploied) 3	4.316
	CNS0095601	Golden flower (diploid) 1	4.495
	CNS0095602	Golden flower (diploid) 2	4.660
	CNS0095603	Golden flower (diploid) 3	4.883
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.183
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.441
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.709
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.398
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.133
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.038
	CNS0095610	Silvery flower (tetraploid) 1	0.272
	CNS0095611	Silvery flower (tetraploid) 2	3.651
	CNS0095612	Silvery flower (tetraploid) 3	5.995
	CNS0095613	Golden flower (tetraploid) 1	0.019
	CNS0095614	Golden flower (tetraploid) 2	0.035
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.777
	CRR073298	Stem 2	3.882
	CRR073299	Stem 3	0.995
	CRR073300	Leaf 1	0.768
	CRR073301	Leaf 2	0.756
	CRR073302	Leaf 3	0.496
	CRR073303	Juvenile bud 1	0.162
	CRR073304	Juvenile bud 2	2.785
	CRR073305	Juvenile bud 3	0.760
	CRR073306	Third green 1	122.349
	CRR073307	Third green 2	58.590
	CRR073308	Third green 3	74.635
	CRR073309	Second white 1	17.339
	CRR073310	Second white 2	12.607
	CRR073311	Second white 3	7.920
	CRR073312	Silver flowering 1	5.368
	CRR073313	Silver flowering 2	9.007
	CRR073314	Silver flowering 3	4.261
	CRR073315	Gold flowering 1	0.152
	CRR073316	Gold flowering 2	0.327
	CRR073317	Gold flowering 3	0.368
	CRR073318	Tawny withering 1	0.206
	CRR073319	Tawny withering 2	0.506
	CRR073320	Tawny withering 3	0.253