Gene detail

Detail information of GWHGAAZE004573

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006361548.1	PREDICTED: cullin-4-like [Solanum tuberosum]
Swissprot	tr\|Q8LGH4\|CUL4_ARATH	Cullin-4
trEMBL	tr\|K4B4Z7\|K4B4Z7_SOLLC	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc02g021470.2.1}
TAIR10	AT5G46210.1	cullin4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	119097172	119110004	-
GWHAAZE00000001	mRNA	119097172	119110004	-
GWHAAZE00000001	exon	119109773	119110004	-
GWHAAZE00000001	exon	119108999	119109114	-
GWHAAZE00000001	exon	119108564	119108910	-
GWHAAZE00000001	exon	119105426	119105606	-
GWHAAZE00000001	exon	119105164	119105286	-
GWHAAZE00000001	exon	119104331	119104618	-
GWHAAZE00000001	exon	119103053	119103178	-
GWHAAZE00000001	exon	119102863	119102964	-
GWHAAZE00000001	exon	119102717	119102770	-
GWHAAZE00000001	exon	119102163	119102269	-
GWHAAZE00000001	exon	119101996	119102056	-
GWHAAZE00000001	exon	119101586	119101717	-
GWHAAZE00000001	exon	119101316	119101453	-
GWHAAZE00000001	exon	119101138	119101218	-
GWHAAZE00000001	exon	119097772	119097852	-
GWHAAZE00000001	exon	119097389	119097469	-
GWHAAZE00000001	exon	119097172	119097285	-
GWHAAZE00000001	CDS	119109773	119110004	-
GWHAAZE00000001	CDS	119108999	119109114	-
GWHAAZE00000001	CDS	119108564	119108910	-
GWHAAZE00000001	CDS	119105426	119105606	-
GWHAAZE00000001	CDS	119105164	119105286	-
GWHAAZE00000001	CDS	119104331	119104618	-
GWHAAZE00000001	CDS	119103053	119103178	-
GWHAAZE00000001	CDS	119102863	119102964	-
GWHAAZE00000001	CDS	119102717	119102770	-
GWHAAZE00000001	CDS	119102163	119102269	-
GWHAAZE00000001	CDS	119101996	119102056	-
GWHAAZE00000001	CDS	119101586	119101717	-
GWHAAZE00000001	CDS	119101316	119101453	-
GWHAAZE00000001	CDS	119101138	119101218	-
GWHAAZE00000001	CDS	119097772	119097852	-
GWHAAZE00000001	CDS	119097389	119097469	-
GWHAAZE00000001	CDS	119097172	119097285	-

Transcript Sequence
>GWHTAAZE004579 ATGAAGAAGGCCAAGTCCCAGGCCATCGCTTTCTCCACAGACAAAAACGGCCTTCAACACAGATCCCAACAACAATCATCACCCCTCCATTTCGACCCCGATATGGACACCATCGAAGATCCGAACCCTAACGACGTTTCCCGATCCTCCTCTGCCGTTACATCCAACTTGTCCCGCAAAAAGGCGACGCCGCCTCAGCCTGCTAAGAAGCTTGTCATCAAGCTCTTGAAAGCTAAACCGACATTGCCTACAAATTTCGAGGAGAATACGTGGGCAACTTTGAAATCGGCTATTAGTGCCATATTCTTGAAGCAACCAGATCCGTGTGATTTGGAGAAGCTTTATCAGGCTGTCAACGACCTTTGCCTTCACAAGATGGGGGGAAATCTTTATCAACGGATTGAAAAAGAGTGTGAATCCCACATATCCACTGCATTACAATCGTTAGTTGGCCAGAGTGAAGACCTTATGGTTTTCTTGTCACTAGTTGAGAAGTGCTGGCAAGATTTTTGTGACCAGATGCTGATGATACGTGGTATAGCATTGTATCTTGATCGAACATATGTGAAACAAACTCCTAATGTCCGTTCATTGTGGGACATGGGCTTGCAGCTTTTCCGCAAACATCTTTCACTAGCTTCAGAAGTTGAGCACAAAACTGTATTTGGCCTTCTGAAAATGATTGAGAGTGAGAGATTAGGTGAAGCGGTTGACAGGACTCTCCTTAACCACCTTCTGAAGATGTTCACCGCATTAGCAATTTATGTGGAAAGCTTTGAAAAGCCGTTCTTAGAACGTACATCTGAATTTTATGCTGCTGAAGGTGTAAAATACATGCAACAGTCGGATGTTACAGATTACTTGAAGCATGTGGAGACAAGGTTGCACGAAGAACATGACCGATGTCTACTCTACCTAGACACAAGTACTAGAAAGCCACTGGTAGCAACTGCTGAAAGGCAACTACTTGAGCGCCATATTTCTGCAATTCTTGATAAGGGTTTTATGATGATGATGGATGGGAATCGGATTGAGGATCTTCAAAGGATGCACTTACTTTTTTCGAGAGTTAATGCTCTGGAATCATTAAGGCAGGCCCTTAGCTCATACATACGGAGAACTGGGCAGGTCCTCATCATGGATGAAGAGAAGGACAAGGATATGGTATCCTCTCTCTTAGAATTTAAGGCATCTCTCGATACTATATGGGAAAAAAGCTTTGCTAAAAACGAAGCATTTAGCAACACTATCAAGGATGCTTTTGAGCATCTCATAAACCTCCGCCAGAACCGACCTGCTGAACTGATAGCCAAGTTTTTGGACGAGAAGCTCCGTGCTGGGAATAAGGGCACATCAGAAGAGGAGTTGGAGGGTATACTCGATAAAGTCTTAGTTTTGTTCAGGTTTATACAGGGTAAGGATGTGTTTGAAGCATTTTATAAGAAGGATCTTGCAAAAAGGCTACTCTTGGGAAAGAGTGCTTCCATTGATGCTGAGAAGTCCATGATATCTAAGTTAAAGACCGAGTGTGGCAGTCAATTTACAAACAAGCTTGAAGGAATGTTCAAGGACGTTGAATTATCAAAAGAGATCAATGAATCTTTCAAGCAGTCATCCCAAGCCAGGACAAAACTACCATCGGGAATCGAGCTGAGCGTCCATGTTTTAACAACAGGGTACTGGCCAACATATCCGCCCATGGATGTCCGGCTTCCCCATGAACTCAATGTCTATCAGGATATTTTCAAGGAGTTCTACTTAAGTAAATACAGTGGAAGGAGGTTAATGTGGCAAAATTCATTAGGTCACTGTGTGTTGAAAGCAGAATTTCCCAGAGGTAAAAAGGAGCTGGCAGTTTCTCTATTTCAGACTGTTGTTTTGATGTTGTTTAACGATGCCCAAAAGCTCAGCTTTCAAGATATAAAGGATGCTACTAGTATCGAGGATAAGGAACTGAGGAGAACTCTCCAGTCCCTTGCTTGTGGAAAAGTTCGTGTCCTTCTAAAGAATCCCAAAGGGAGAGATGTAGAGGATGATGATTCGTTTGTGTTTAATGATGGATTTACTGCGTCTCTCTATCGTTTAAAGGTAAATGCTATCCAGATGAAGGAAACGGTGGAGGAGAATACAAGTACCACTGAGAGAGTATTTCAGGATCGTCAATATCAGGTTGATGCTGCTATTGTTCGGATAATGAAGACAAGGAAAGTGCTAAGTCACACACTCCTGATTACTGAACTCTTTCAACAGCTCAAGTTTCCGATAAAACCAGCTGACTTAAAGAAAAGGATTGAAAGCCTCATCGATAGGGAGTACCTGGAGCGGGACAAGAACAACCCACAAATATACAATTATCTGGCGTAA

Network for GWHGAAZE004573

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00888.23	Cullin	91	688	5.30E-208
PF10557.10	Cullin_Nedd8	719	779	1.10E-22

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	Cullin

KEGG pathway

KO	Enzyme	pathway	mapID
K10609	CUL4	Ubiquitin mediated proteolysis	map04120
K10609	CUL4	Nucleotide excision repair	map03420

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0031461	cellular_component	cullin-RING ubiquitin ligase complex
GO:0031625	molecular_function	ubiquitin protein ligase binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	57.110
	SRR3591706	second leaf	32.077
	SRR3591707	mature leaf	36.418
	SRR3591708	Shoot apex	40.607
	SRR3591709	Stem	48.409
	SRR3591710	White floral bud	48.577
	SRR3591711	White flower	40.210
	SRR3591712	Green floral bud	40.372
	SRR3591713	Yellow flower	38.160
SRP173429	SRR8316895	Juvenile bud stage	25.087
	SRR8316896	Juvenile bud stage	36.556
	SRR8316897	Juvenile bud stage	14.670
	SRR8316894	Third green stage	17.327
	SRR8316900	Third green stage	41.517
	SRR8316901	Third green stage	37.780
	SRR8316898	Complete white stage	19.299
	SRR8316899	Complete white stage	53.335
	SRR8316903	Complete white stage	36.004
	SRR8316902	Silver flowering stage	13.330
	SRR8316904	Silver flowering stage	25.619
	SRR8316905	Silver flowering stage	11.551
	SRR8316906	Gold flowering stage	37.767
	SRR8316907	Gold flowering stage	36.568
	SRR8316908	Gold flowering stage	36.860
SRP132670	SRR6706286	Control	26.822
	SRR6706287	Light intensity 50%	29.106
	SRR6706288	Light intensity 20%	29.887
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.300
	CNS0095593	Slightly white alabastrum(diploid) 2	16.874
	CNS0095594	Slightly white alabastrum(diploid) 3	16.907
	CNS0095595	Whole white alabastrum(diploid) 2	17.973
	CNS0095596	Whole white alabastrum(diploid) 3	16.849
	CNS0095597	Whole white alabastrum(diploid) 4	19.099
	CNS0095598	Silvery flower (diploied) 1	22.080
	CNS0095599	Silvery flower (diploied) 2	20.183
	CNS0095600	Silvery flower (diploied) 3	44.122
	CNS0095601	Golden flower (diploid) 1	20.550
	CNS0095602	Golden flower (diploid) 2	46.238
	CNS0095603	Golden flower (diploid) 3	45.147
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.283
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.106
	CNS0095606	Slightly white alabastrum(tetraploid) 3	46.722
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.130
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.600
	CNS0095609	Whole white alabastrum(tetraploid) 3	37.390
	CNS0095610	Silvery flower (tetraploid) 1	45.010
	CNS0095611	Silvery flower (tetraploid) 2	50.124
	CNS0095612	Silvery flower (tetraploid) 3	45.277
	CNS0095613	Golden flower (tetraploid) 1	21.913
	CNS0095614	Golden flower (tetraploid) 2	39.937
	CNS0095615	Golden flower (tetraploid) 3	51.222
CRA001975	CRR073297	Stem 1	36.612
	CRR073298	Stem 2	32.536
	CRR073299	Stem 3	31.567
	CRR073300	Leaf 1	40.160
	CRR073301	Leaf 2	27.904
	CRR073302	Leaf 3	26.189
	CRR073303	Juvenile bud 1	27.377
	CRR073304	Juvenile bud 2	27.772
	CRR073305	Juvenile bud 3	43.988
	CRR073306	Third green 1	20.171
	CRR073307	Third green 2	15.968
	CRR073308	Third green 3	22.053
	CRR073309	Second white 1	21.698
	CRR073310	Second white 2	23.784
	CRR073311	Second white 3	26.602
	CRR073312	Silver flowering 1	21.974
	CRR073313	Silver flowering 2	22.882
	CRR073314	Silver flowering 3	15.033
	CRR073315	Gold flowering 1	15.905
	CRR073316	Gold flowering 2	28.817
	CRR073317	Gold flowering 3	24.605
	CRR073318	Tawny withering 1	22.680
	CRR073319	Tawny withering 2	16.628
	CRR073320	Tawny withering 3	19.600