Detail information of GWHGAAZE004577


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002266057.10PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Vitis vinifera]
Swissprottr|C0LGQ4|MRH1_ARATH0Probable LRR receptor-like serine/threonine-protein kinase MRH1 (Precursor)
trEMBLtr|D7TJM4|D7TJM4_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI30696.3}
TAIR10AT4G18640.10Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene119174788119179251-
GWHAAZE00000001mRNA119174788119179251-
GWHAAZE00000001exon119174788119175048-
GWHAAZE00000001exon119175523119175708-
GWHAAZE00000001exon119175800119175954-
GWHAAZE00000001exon119176041119176173-
GWHAAZE00000001exon119176242119176477-
GWHAAZE00000001exon119176562119176993-
GWHAAZE00000001exon119177312119177373-
GWHAAZE00000001exon119177480119177575-
GWHAAZE00000001exon119177708119177851-
GWHAAZE00000001exon119177947119178090-
GWHAAZE00000001exon119178280119178351-
GWHAAZE00000001exon119178907119179039-
GWHAAZE00000001exon119179137119179251-
GWHAAZE00000001CDS119179137119179251-
GWHAAZE00000001CDS119178907119179039-
GWHAAZE00000001CDS119178280119178351-
GWHAAZE00000001CDS119177947119178090-
GWHAAZE00000001CDS119177708119177851-
GWHAAZE00000001CDS119177480119177575-
GWHAAZE00000001CDS119177312119177373-
GWHAAZE00000001CDS119176562119176993-
GWHAAZE00000001CDS119176242119176477-
GWHAAZE00000001CDS119176041119176173-
GWHAAZE00000001CDS119175800119175954-
GWHAAZE00000001CDS119175523119175708-
GWHAAZE00000001CDS119174788119175048-
Transcript Sequence

Network for GWHGAAZE004577

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08263.13LRRNT_238753.70E-10
PF13855.7LRR_81021621.20E-08
PF07714.18PK_Tyr_Ser-Thr4756918.10E-19
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_LRR-VI-2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.971
SRR3591706second leaf1.805
SRR3591707mature leaf0.328
SRR3591708Shoot apex1.353
SRR3591709Stem3.585
SRR3591710White floral bud76.096
SRR3591711White flower4.227
SRR3591712Green floral bud32.389
SRR3591713Yellow flower2.122
SRP173429 SRR8316895Juvenile bud stage 6.885
SRR8316896Juvenile bud stage 14.480
SRR8316897Juvenile bud stage 3.184
SRR8316894Third green stage 5.003
SRR8316900Third green stage 19.482
SRR8316901Third green stage 17.071
SRR8316898Complete white stage 1.495
SRR8316899Complete white stage 2.293
SRR8316903Complete white stage 2.009
SRR8316902Silver flowering stage1.645
SRR8316904Silver flowering stage3.432
SRR8316905Silver flowering stage0.877
SRR8316906Gold flowering stage 1.722
SRR8316907Gold flowering stage 3.147
SRR8316908Gold flowering stage 0.869
SRP132670SRR6706286Control18.933
SRR6706287Light intensity 50%18.725
SRR6706288Light intensity 20%15.813
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.690
CNS0095593Slightly white alabastrum(diploid) 211.110
CNS0095594Slightly white alabastrum(diploid) 315.088
CNS0095595Whole white alabastrum(diploid) 246.572
CNS0095596Whole white alabastrum(diploid) 348.622
CNS0095597Whole white alabastrum(diploid) 468.190
CNS0095598Silvery flower (diploied) 14.121
CNS0095599Silvery flower (diploied) 212.890
CNS0095600Silvery flower (diploied) 37.931
CNS0095601Golden flower (diploid) 15.818
CNS0095602Golden flower (diploid) 27.684
CNS0095603Golden flower (diploid) 37.338
CNS0095604Slightly white alabastrum(tetraploid) 121.478
CNS0095605Slightly white alabastrum(tetraploid) 222.899
CNS0095606Slightly white alabastrum(tetraploid) 34.162
CNS0095607Whole white alabastrum(tetraploid) 159.107
CNS0095608Whole white alabastrum(tetraploid) 274.048
CNS0095609Whole white alabastrum(tetraploid) 333.592
CNS0095610Silvery flower (tetraploid) 17.221
CNS0095611Silvery flower (tetraploid) 212.735
CNS0095612Silvery flower (tetraploid) 326.181
CNS0095613Golden flower (tetraploid) 15.606
CNS0095614Golden flower (tetraploid) 23.600
CNS0095615Golden flower (tetraploid) 317.439
CRA001975CRR073297Stem 130.974
CRR073298Stem 222.332
CRR073299Stem 323.798
CRR073300Leaf 126.748
CRR073301Leaf 217.278
CRR073302Leaf 38.301
CRR073303Juvenile bud 126.931
CRR073304Juvenile bud 214.969
CRR073305Juvenile bud 36.697
CRR073306Third green 114.474
CRR073307Third green 213.260
CRR073308Third green 315.106
CRR073309Second white 10.858
CRR073310Second white 23.952
CRR073311Second white 34.104
CRR073312Silver flowering 120.937
CRR073313Silver flowering 223.603
CRR073314Silver flowering 312.302
CRR073315Gold flowering 18.897
CRR073316Gold flowering 24.194
CRR073317Gold flowering 33.671
CRR073318Tawny withering 117.886
CRR073319Tawny withering 217.371
CRR073320Tawny withering 317.592