Gene detail

Detail information of GWHGAAZE004578

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010999741.1	4.67666E-85	PREDICTED: uncharacterized protein LOC105107499 [Populus euphratica]
Swissprot	tr\|Q700D9\|MYBF_ARATH	4E-27	Putative Myb family transcription factor At1g14600
trEMBL	tr\|A0A068TN77\|A0A068TN77_COFCA	2E-80	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO96808.1}
TAIR10	AT2G38300.1	3E-32	myb-like HTH transcriptional regulator family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	119187316	119190275	+
GWHAAZE00000001	mRNA	119187316	119190275	+
GWHAAZE00000001	exon	119187316	119187684	+
GWHAAZE00000001	exon	119187957	119188033	+
GWHAAZE00000001	exon	119188153	119188189	+
GWHAAZE00000001	exon	119188812	119188998	+
GWHAAZE00000001	exon	119189203	119189551	+
GWHAAZE00000001	exon	119190075	119190275	+
GWHAAZE00000001	five_prime_UTR	119187316	119187338	+
GWHAAZE00000001	CDS	119187339	119187684	+
GWHAAZE00000001	CDS	119187957	119188033	+
GWHAAZE00000001	CDS	119188153	119188189	+
GWHAAZE00000001	CDS	119188812	119188998	+
GWHAAZE00000001	CDS	119189203	119189551	+
GWHAAZE00000001	CDS	119190075	119190275	+

Transcript Sequence
>GWHTAAZE004584 TCAACGAGGGAAAATTCATCATCATGAGTGAATCTTTAGAGAACCACGATGATAAAAAACACAGTGAATTTGACGAACAAGTGGAGACTGCGGTATCTGTGAATTTGCACAAGTTTTCGTCCTTTGACTTGAATGAAGATGCCAACACCAGTGAGGATAATGGACTTGATGAACTTAGTGGTGATGATGAGGATGGTGATCAAAAAACGGCACAAGAGAATTCGGCCAACAATAGCACCTCGGGTGAAGGAAACGAAAGGAAGGCTAGGGTTCGGCAATATGTTCGATCAAAAATGCCTCGTCTTCGTTGGACCCCGGACCTCCATCGATCTTTTGTGCTTGCTATTGAAAGACTTGGTGGACAAGAGAGAGCAACCCCCAAATTAGTTCTTCAGTTGATGAATGTGAGAGGATTAAGCATTGCCCATGTAAAAAGTCACTTGCAGATGTACCGAAGTAAGAAGCTCGACGAATCTGGGCAAGTATTATGTCAAACAACTAGATCAATTAGCATGTTTAACCAAAGGGCAACTCCTCTTCAACACGTCAAACTAGCAAATGGCGGAATTGTGCTAGCGACGGATCCCAAAGATGATGATTGTATTAAGAGTACTCTTATGCAACATTCCCTCTATCAATCTACATTTTATGCCAATTCTCTCTCTTCAAGACGCCAGTTATGGTCTTCCAATCAACACACGATAATTAGGCCAATGGTTCGAGACACGATATCTAGTCCAAACGAAATATGTGGCACCGCCCAAATTGTCCCCATGAAAGCTGGCCAATTCATAGAGGAAAAGAGATGGCCTCCGCGTGAATTCATTAGAAATCAATGGAAAGAGAGGAGGATACCTAATGCTAATATTTGCGGAAGTAATACAGTCACCCAACCTTCCATTTATAAAGTGTCTACCACATCAGGGTCTGGTGGATCAACTTACTTCACCCAATCACAACAATGGAACTACAAAGATAGTACTAGTGCAAGGAATATTTGGCAATATCATCAATCCAGTTTAAATGAGGGAAAAAGGAAGAAAGAGTTAATGCCTGATTTGCAGCTGAGATTGAGCCAAAATGGAGGAAACCTTGAAGAGAAGAAGGCGGGTACTAGTCATAGAAAGAGTAATACTACTAGTACTGCTCCAGATATCAACACCAAGCTTTCTCTCTCTCTGTCATCCTCCTATTCATCCATGCAAACAAGTACAACCTAG

Network for GWHGAAZE004578

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	94	144	2.00E-05

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-G2-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.500
	SRR3591706	second leaf	9.211
	SRR3591707	mature leaf	14.086
	SRR3591708	Shoot apex	2.072
	SRR3591709	Stem	0.591
	SRR3591710	White floral bud	1.272
	SRR3591711	White flower	1.274
	SRR3591712	Green floral bud	1.520
	SRR3591713	Yellow flower	1.378
SRP173429	SRR8316895	Juvenile bud stage	0.339
	SRR8316896	Juvenile bud stage	0.476
	SRR8316897	Juvenile bud stage	1.422
	SRR8316894	Third green stage	0.406
	SRR8316900	Third green stage	0.375
	SRR8316901	Third green stage	0.754
	SRR8316898	Complete white stage	0.036
	SRR8316899	Complete white stage	1.199
	SRR8316903	Complete white stage	0.441
	SRR8316902	Silver flowering stage	0.074
	SRR8316904	Silver flowering stage	0.081
	SRR8316905	Silver flowering stage	0.052
	SRR8316906	Gold flowering stage	0.750
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.491
SRP132670	SRR6706286	Control	0.404
	SRR6706287	Light intensity 50%	0.312
	SRR6706288	Light intensity 20%	0.265
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.176
	CNS0095593	Slightly white alabastrum(diploid) 2	0.051
	CNS0095594	Slightly white alabastrum(diploid) 3	0.183
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.068
	CNS0095597	Whole white alabastrum(diploid) 4	0.005
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.255
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.505
	CNS0095603	Golden flower (diploid) 3	0.424
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.338
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.367
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.051
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.042
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.615
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.654
	CNS0095610	Silvery flower (tetraploid) 1	0.359
	CNS0095611	Silvery flower (tetraploid) 2	0.042
	CNS0095612	Silvery flower (tetraploid) 3	0.850
	CNS0095613	Golden flower (tetraploid) 1	0.171
	CNS0095614	Golden flower (tetraploid) 2	0.339
	CNS0095615	Golden flower (tetraploid) 3	1.151
CRA001975	CRR073297	Stem 1	0.819
	CRR073298	Stem 2	1.438
	CRR073299	Stem 3	0.579
	CRR073300	Leaf 1	0.603
	CRR073301	Leaf 2	0.275
	CRR073302	Leaf 3	0.547
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.106
	CRR073305	Juvenile bud 3	0.238
	CRR073306	Third green 1	0.200
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.198
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.322
	CRR073311	Second white 3	0.242
	CRR073312	Silver flowering 1	0.207
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	3.379
	CRR073316	Gold flowering 2	2.783
	CRR073317	Gold flowering 3	3.217
	CRR073318	Tawny withering 1	0.158
	CRR073319	Tawny withering 2	0.526
	CRR073320	Tawny withering 3	0.171