Gene detail

Detail information of GWHGAAZE004634

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010655464.1	0	PREDICTED: auxin response factor 3 [Vitis vinifera]
Swissprot	tr\|O23661\|ARFC_ARATH	0	Auxin response factor 3
trEMBL	tr\|M4R4C6\|M4R4C6_CAMSI	0	Auxin response factor {ECO:0000256\|RuleBase:RU004561}
TAIR10	AT2G33860.1	7E-148	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	120026764	120032080	+
GWHAAZE00000001	mRNA	120026764	120032080	+
GWHAAZE00000001	exon	120026764	120027147	+
GWHAAZE00000001	exon	120027360	120027416	+
GWHAAZE00000001	exon	120027786	120027968	+
GWHAAZE00000001	exon	120028093	120028177	+
GWHAAZE00000001	exon	120028330	120028420	+
GWHAAZE00000001	exon	120028833	120028991	+
GWHAAZE00000001	exon	120029775	120029894	+
GWHAAZE00000001	exon	120029970	120030045	+
GWHAAZE00000001	exon	120030903	120031065	+
GWHAAZE00000001	exon	120031242	120032080	+
GWHAAZE00000001	five_prime_UTR	120026764	120026838	+
GWHAAZE00000001	CDS	120026839	120027147	+
GWHAAZE00000001	CDS	120027360	120027416	+
GWHAAZE00000001	CDS	120027786	120027968	+
GWHAAZE00000001	CDS	120028093	120028177	+
GWHAAZE00000001	CDS	120028330	120028420	+
GWHAAZE00000001	CDS	120028833	120028991	+
GWHAAZE00000001	CDS	120029775	120029894	+
GWHAAZE00000001	CDS	120029970	120030045	+
GWHAAZE00000001	CDS	120030903	120031065	+
GWHAAZE00000001	CDS	120031242	120032080	+

Transcript Sequence
>GWHTAAZE004640 AGCTTACACTATTTACCTTTGTTTACAGTTTTTTGCTTGCTCTATATCTTACTGCTGGATTTCTAGGGTTTTGCGATGATTTGTGGACTAATTGATCTCAATACTATCAACGACGACGATGAAACGTCGCCTGCGTTGTTCGATTCGCCTTCGTCCTCCTCCTCCTCTGCTTCGGCTAATTTGTCCTTGTCACCGTTGATGACGTCATCGTCGGTCTGTTTGGAGTTGTGGCACGCTTGTGCCGGTCCGATTTCGCTGCCGAAGAAAGGCAGTGCGGTGGTGTACTTGCCGCAGGGCCACTCCGAGCATGTCTCCGATTTTCCGGCAGCGGCTTATGATCTTCCACCTCACGTCTTTTGTCGCGTTGTGGATGTCAAGCTTCATGCGGAGGAAGCTACTGATGAGGTTTATGCACAAGTTTCCTTAATGCCAGAGATTCACAGTGAGCAGAAATGGAGTGAAGGGGAAACTGAAGGAGAAATTGAAGAAGAGGAGGACATGGAAGTTGCTGGCAAGTCGATGACGCCACACATGTTCTGCAAGACCCTCACTGCTTCTGATACTAGTACTCATGGAGGATTCTCTGTTCCTCGACGAGCAGCTGAGGACTGCTTCCCTCCCCTGGACTATAAACAACAGAGGCCTTCACAGGAGCTTGTAGCTAAAGATTTGCATGGGACTGAATGGAGGTTCCGGCACATATACCGGGGCCAGCCTAGGAGGCATCTGCTAACTACTGGTTGGAGTGCGTTTGTCAATAAGAAGAAGCTTGTTTGTGGAGATGCTGTTCTCTTCCTAAGGGGTGGGGATGGAGAACTGAGACTTGGAGTCCGAAGAGCCTCTCAAGTTAAAGGTGGAGCAACTTTTCCACTAGTATGTACCCAGCAGTTGAATGACATCACTGCTGTGGTCAATGCCATATCTATGAGAAGTGTCTTTAGCGTTTGCTACAATCCAAGGTCTAACTCATCAGAATTCATAATACCTTTCCGCAAGTTTTCAAAGAGCCTTGCACATTCTTTTTCAGCTGGAATGAGGTTTAAAATGCACGTAGAATCAGAGGATGCATCAGAGAGAAGGTATACCGGACTCATAACTGGGATTAGCGATATGGATCCTCTCAGGTGGCCTGGTTCAAAATGGAGGTGCTTGATGGTAAGGTGGGATGATGTGGAGGTAACACGTCATAACAGGGTTTCTCCGTGGGAGATTGATCCATCTGGGTCAGTTTCTGGACCCAGTAGCATGGTGCCACCTGGTACAAAGAGGACAAGGATTAGTATCCCTACAACAAAATCAGATTTTCCACTTCCCGCAGATGGAATGGGAGTGTCAGACTTTGGGGAATCTTTAAGGTTCCGAAAGGTCTTGCAAGGTCAAGAAATTATGGGTTTTAGTACTCCTTATGGTAGTGTTGATGCCCAGAGTCACCACTCACCCGAAATGAGGGGTTGCTTTCCTGTTTCCAACAGTTCCAGGATCTCTTCAATAGGAAATTCCTATGAAGGCACAGGCTTTGGTGAATCTTTTCGATTCAGTAAGGTCTTGCAAGGCCAAGAATTTTCAACCTTGCCCTACGGAAGAGCTCTGGCTGGTAATCAGGTCCACGAGAATAGCGGTTTCCAAATCATTGACAGTCTCCGAGCACCAAGCTCTGGAACTGGGTGGGCTCCGCTGATGCAAGGCTATGGTAATTGCGTACACCCTTCAGCACCAATGGCTCAAGTATCGTCGCCCTCATCTGTTCTAATGTTCCAGCATCCCAGAACTTCAGCTCCTAGTTTTTGTGCAGAAAGGCATTTTGGTAATTTCACATCATCATCACCTCGCGACCACAGCTCTGGTACCGTAGATCAGCAATCCTCTAACGCCTATGGTCTTATAAGGGAGAATAACCAACTGGGTTTGTCTCATCTTCCACCGCCAAGTCAAATTTCTGCGTGTAAAAGTAACTGCAGGCTATTTGGGTTTTCATTGACCGAGGGAAATAGGGCTATGAATAAAGAGGAAGATCCAACTGTCTCTTTTCTGCCACATGGTGAGGATCGTTCAAATCTGAAGTCGCCTCCCCTGGTGAACAAGGTGGTGGGAGGCAGTTGTACCAAAGCAAGAGATCTCTATGCTGTACGAGATATGCTTCTTGATATTGCGCTGTAG

Network for GWHGAAZE004634

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	154	255	7.90E-22
PF06507.14	Auxin_resp	279	359	2.00E-33

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3-ARF

KEGG pathway

KO	Enzyme	pathway	mapID
K14486	K14486, ARF	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0009725	biological_process	response to hormone
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	71.548
	SRR3591706	second leaf	25.325
	SRR3591707	mature leaf	32.854
	SRR3591708	Shoot apex	62.605
	SRR3591709	Stem	93.861
	SRR3591710	White floral bud	29.926
	SRR3591711	White flower	31.787
	SRR3591712	Green floral bud	49.396
	SRR3591713	Yellow flower	9.383
SRP173429	SRR8316895	Juvenile bud stage	32.899
	SRR8316896	Juvenile bud stage	37.832
	SRR8316897	Juvenile bud stage	13.475
	SRR8316894	Third green stage	16.852
	SRR8316900	Third green stage	27.916
	SRR8316901	Third green stage	31.650
	SRR8316898	Complete white stage	4.686
	SRR8316899	Complete white stage	43.495
	SRR8316903	Complete white stage	6.949
	SRR8316902	Silver flowering stage	3.131
	SRR8316904	Silver flowering stage	2.309
	SRR8316905	Silver flowering stage	0.586
	SRR8316906	Gold flowering stage	0.561
	SRR8316907	Gold flowering stage	1.769
	SRR8316908	Gold flowering stage	1.949
SRP132670	SRR6706286	Control	35.017
	SRR6706287	Light intensity 50%	37.179
	SRR6706288	Light intensity 20%	38.803
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.414
	CNS0095593	Slightly white alabastrum(diploid) 2	13.996
	CNS0095594	Slightly white alabastrum(diploid) 3	11.007
	CNS0095595	Whole white alabastrum(diploid) 2	11.052
	CNS0095596	Whole white alabastrum(diploid) 3	10.423
	CNS0095597	Whole white alabastrum(diploid) 4	8.279
	CNS0095598	Silvery flower (diploied) 1	20.429
	CNS0095599	Silvery flower (diploied) 2	19.638
	CNS0095600	Silvery flower (diploied) 3	8.011
	CNS0095601	Golden flower (diploid) 1	19.920
	CNS0095602	Golden flower (diploid) 2	12.362
	CNS0095603	Golden flower (diploid) 3	12.079
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.978
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.636
	CNS0095606	Slightly white alabastrum(tetraploid) 3	35.881
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.529
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.013
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.372
	CNS0095610	Silvery flower (tetraploid) 1	6.757
	CNS0095611	Silvery flower (tetraploid) 2	8.018
	CNS0095612	Silvery flower (tetraploid) 3	3.478
	CNS0095613	Golden flower (tetraploid) 1	1.642
	CNS0095614	Golden flower (tetraploid) 2	5.771
	CNS0095615	Golden flower (tetraploid) 3	1.206
CRA001975	CRR073297	Stem 1	78.635
	CRR073298	Stem 2	67.575
	CRR073299	Stem 3	77.735
	CRR073300	Leaf 1	55.499
	CRR073301	Leaf 2	54.692
	CRR073302	Leaf 3	55.786
	CRR073303	Juvenile bud 1	48.468
	CRR073304	Juvenile bud 2	37.883
	CRR073305	Juvenile bud 3	67.576
	CRR073306	Third green 1	4.914
	CRR073307	Third green 2	7.095
	CRR073308	Third green 3	5.783
	CRR073309	Second white 1	2.701
	CRR073310	Second white 2	1.606
	CRR073311	Second white 3	0.854
	CRR073312	Silver flowering 1	0.527
	CRR073313	Silver flowering 2	1.240
	CRR073314	Silver flowering 3	0.801
	CRR073315	Gold flowering 1	5.455
	CRR073316	Gold flowering 2	13.789
	CRR073317	Gold flowering 3	14.034
	CRR073318	Tawny withering 1	71.175
	CRR073319	Tawny withering 2	48.440
	CRR073320	Tawny withering 3	53.133