Gene detail

Detail information of GWHGAAZE004654

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006467763.1	7.764E-171	PREDICTED: mitochondrial arginine transporter BAC1-like isoform X1 [Citrus sinensis]
Swissprot	tr\|Q84UC7\|BAC1_ARATH	3E-152	Mitochondrial arginine transporter BAC1
trEMBL	tr\|A0A067GQD0\|A0A067GQD0_CITSI	3E-171	Uncharacterized protein {ECO:0000313\|EMBL:KDO77622.1}
TAIR10	AT2G33820.1	1E-114	Mitochondrial substrate carrier family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	120271515	120275647	+
GWHAAZE00000001	mRNA	120271515	120275647	+
GWHAAZE00000001	exon	120271515	120271699	+
GWHAAZE00000001	exon	120273409	120273480	+
GWHAAZE00000001	exon	120274116	120274217	+
GWHAAZE00000001	exon	120274464	120274568	+
GWHAAZE00000001	exon	120274682	120274780	+
GWHAAZE00000001	exon	120274849	120275037	+
GWHAAZE00000001	exon	120275304	120275402	+
GWHAAZE00000001	exon	120275513	120275647	+
GWHAAZE00000001	five_prime_UTR	120271515	120271606	+
GWHAAZE00000001	CDS	120271607	120271699	+
GWHAAZE00000001	CDS	120273409	120273480	+
GWHAAZE00000001	CDS	120274116	120274217	+
GWHAAZE00000001	CDS	120274464	120274568	+
GWHAAZE00000001	CDS	120274682	120274780	+
GWHAAZE00000001	CDS	120274849	120275037	+
GWHAAZE00000001	CDS	120275304	120275402	+
GWHAAZE00000001	CDS	120275513	120275647	+

Transcript Sequence
>GWHTAAZE004660 AAGAATAGAAAAATACAATACAATCGGAAGATCCAACAAAATGACCGATGCTGAGAAGTAGAGGAAGAGAGAGTTAGAATAGAACCAAGGAAATGGGATACAGTTCCGGTTACAAGGACTACGTGGCAGGTTTACTCGCCGGCGTTTCCACTGTTATCATCGGTCATCCCTTCGACACCGTCAAGGTCAAGCTCCAAAAACACAATACTGAAGTTAAAGGGATCAAGTATAGGAGCGGGTTGCATTGTACTACTAGGGTGAGAGGGCTATACCGAGGTGCAACATCTTCTTTTGTGGGGGTGGCCTTTGAAAGTTCACTTCTTTTTGGTATTTATTCCCAAGCAAAACAATCGCTGCAGGGAGGAGTTCAAAGTGGTACGCCTCAGCCCCATGTAATAATACCTTCAGCATCTTTTGGTGGAGCTATTATAAGCTTTGTACTATGTCCTTCAGAGCTGATGAAGTGTAGGATGCAAGTTCAAGGCACTGACTCTTCTGTTTCAAACTCTAGTAGATACACTAGTCCTCTTGATTGTGCAATTAAAACTGTAAAAACCGAAGGGGTTGTAGGAGTTTTTCGAGGAGGTTTAACGACCTTGTTAAGAGAATCTATAGGAAATGCAGTCTTCTTTATGACTTACGAGTATGTACGCTATTATATGCACTCACAACTAAAACTTGCTTCTTCTGATTCAAACAACTTGATTGATCTGGGAGTTGGAGTAATGAGTGGCGGTCTTGGTGGTATAGCGTTTTGGTCTGCTGTTCTGCCCTTGGACGTTGCAAAAACAATTATTCAAACTACCCCAGAGAAATGCTTGACAAGAAATCCTTTTCGGATATTGAATTTGATTTACAGGAGGTCTGGACTTAAAGGATGCTATACAGGTTTAGGTCCTACAGTAGTAAGGGCATTTCCAGCAAATGCTGCTGCAATTGTCACTTGGGAGCTAGCTGTTAAGGTTCTTGGGATTCAACGTGACTAA

Network for GWHGAAZE004654

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00153.28	Mito_carr	7	89	1.60E-13
PF00153.28	Mito_carr	105	190	9.70E-18
PF00153.28	Mito_carr	211	292	4.80E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15109	SLC25A20_29, CACT, CACL, CRC1	Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.264
	SRR3591706	second leaf	3.439
	SRR3591707	mature leaf	6.066
	SRR3591708	Shoot apex	7.220
	SRR3591709	Stem	5.187
	SRR3591710	White floral bud	2.926
	SRR3591711	White flower	4.930
	SRR3591712	Green floral bud	4.842
	SRR3591713	Yellow flower	1.710
SRP173429	SRR8316895	Juvenile bud stage	3.240
	SRR8316896	Juvenile bud stage	4.984
	SRR8316897	Juvenile bud stage	1.353
	SRR8316894	Third green stage	1.776
	SRR8316900	Third green stage	7.336
	SRR8316901	Third green stage	7.177
	SRR8316898	Complete white stage	0.932
	SRR8316899	Complete white stage	7.942
	SRR8316903	Complete white stage	2.019
	SRR8316902	Silver flowering stage	1.212
	SRR8316904	Silver flowering stage	0.840
	SRR8316905	Silver flowering stage	0.399
	SRR8316906	Gold flowering stage	0.991
	SRR8316907	Gold flowering stage	0.938
	SRR8316908	Gold flowering stage	1.422
SRP132670	SRR6706286	Control	2.840
	SRR6706287	Light intensity 50%	2.444
	SRR6706288	Light intensity 20%	4.131
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.666
	CNS0095593	Slightly white alabastrum(diploid) 2	2.633
	CNS0095594	Slightly white alabastrum(diploid) 3	5.253
	CNS0095595	Whole white alabastrum(diploid) 2	6.035
	CNS0095596	Whole white alabastrum(diploid) 3	4.894
	CNS0095597	Whole white alabastrum(diploid) 4	4.336
	CNS0095598	Silvery flower (diploied) 1	2.375
	CNS0095599	Silvery flower (diploied) 2	2.419
	CNS0095600	Silvery flower (diploied) 3	2.012
	CNS0095601	Golden flower (diploid) 1	2.607
	CNS0095602	Golden flower (diploid) 2	1.400
	CNS0095603	Golden flower (diploid) 3	1.884
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.568
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.540
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.601
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.623
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.226
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.152
	CNS0095610	Silvery flower (tetraploid) 1	3.866
	CNS0095611	Silvery flower (tetraploid) 2	3.583
	CNS0095612	Silvery flower (tetraploid) 3	1.208
	CNS0095613	Golden flower (tetraploid) 1	1.038
	CNS0095614	Golden flower (tetraploid) 2	2.916
	CNS0095615	Golden flower (tetraploid) 3	0.591
CRA001975	CRR073297	Stem 1	2.155
	CRR073298	Stem 2	3.041
	CRR073299	Stem 3	0.890
	CRR073300	Leaf 1	1.960
	CRR073301	Leaf 2	2.861
	CRR073302	Leaf 3	3.020
	CRR073303	Juvenile bud 1	2.345
	CRR073304	Juvenile bud 2	1.903
	CRR073305	Juvenile bud 3	1.898
	CRR073306	Third green 1	0.106
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.076
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.471
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.111
	CRR073315	Gold flowering 1	1.345
	CRR073316	Gold flowering 2	2.450
	CRR073317	Gold flowering 3	0.116
	CRR073318	Tawny withering 1	4.627
	CRR073319	Tawny withering 2	3.719
	CRR073320	Tawny withering 3	3.361