Detail information of GWHGAAZE004655


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009602314.13.99869E-52PREDICTED: squamosa promoter-binding protein 1-like isoform X2 [Nicotiana tomentosiformis]
Swissprottr|Q38741|SBP1_ANTMA4E-47Squamosa promoter-binding protein 1
trEMBLtr|A0A068TTY6|A0A068TTY6_COFCA2E-52Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313|EMBL:CDO99517.1}
TAIR10AT1G53160.21E-33squamosa promoter binding protein-like 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene120277069120278457-
GWHAAZE00000001mRNA120277069120278457-
GWHAAZE00000001exon120277069120277469-
GWHAAZE00000001exon120278261120278457-
GWHAAZE00000001CDS120278261120278457-
GWHAAZE00000001CDS120277352120277469-
GWHAAZE00000001three_prime_UTR120277069120277351-
Transcript Sequence

Network for GWHGAAZE004655

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03110.15SBP20932.30E-32
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySBP

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0009908biological_processflower development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functionDNA-binding transcription factor activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf71.537
SRR3591706second leaf189.070
SRR3591707mature leaf165.959
SRR3591708Shoot apex109.685
SRR3591709Stem116.853
SRR3591710White floral bud51.015
SRR3591711White flower42.486
SRR3591712Green floral bud89.897
SRR3591713Yellow flower9.994
SRP173429 SRR8316895Juvenile bud stage 154.414
SRR8316896Juvenile bud stage 109.410
SRR8316897Juvenile bud stage 76.259
SRR8316894Third green stage 37.505
SRR8316900Third green stage 95.846
SRR8316901Third green stage 85.798
SRR8316898Complete white stage 9.906
SRR8316899Complete white stage 130.359
SRR8316903Complete white stage 22.072
SRR8316902Silver flowering stage9.764
SRR8316904Silver flowering stage13.482
SRR8316905Silver flowering stage7.580
SRR8316906Gold flowering stage 24.122
SRR8316907Gold flowering stage 18.243
SRR8316908Gold flowering stage 17.133
SRP132670SRR6706286Control91.322
SRR6706287Light intensity 50%101.125
SRR6706288Light intensity 20%106.204
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1163.778
CNS0095593Slightly white alabastrum(diploid) 2174.654
CNS0095594Slightly white alabastrum(diploid) 3126.687
CNS0095595Whole white alabastrum(diploid) 2161.039
CNS0095596Whole white alabastrum(diploid) 394.485
CNS0095597Whole white alabastrum(diploid) 497.341
CNS0095598Silvery flower (diploied) 1135.613
CNS0095599Silvery flower (diploied) 2159.076
CNS0095600Silvery flower (diploied) 339.582
CNS0095601Golden flower (diploid) 1198.607
CNS0095602Golden flower (diploid) 279.471
CNS0095603Golden flower (diploid) 374.106
CNS0095604Slightly white alabastrum(tetraploid) 1148.172
CNS0095605Slightly white alabastrum(tetraploid) 2148.099
CNS0095606Slightly white alabastrum(tetraploid) 3254.582
CNS0095607Whole white alabastrum(tetraploid) 1107.004
CNS0095608Whole white alabastrum(tetraploid) 257.113
CNS0095609Whole white alabastrum(tetraploid) 392.094
CNS0095610Silvery flower (tetraploid) 113.316
CNS0095611Silvery flower (tetraploid) 236.550
CNS0095612Silvery flower (tetraploid) 313.779
CNS0095613Golden flower (tetraploid) 113.230
CNS0095614Golden flower (tetraploid) 211.519
CNS0095615Golden flower (tetraploid) 34.410
CRA001975CRR073297Stem 1193.003
CRR073298Stem 2165.981
CRR073299Stem 3206.692
CRR073300Leaf 172.266
CRR073301Leaf 289.200
CRR073302Leaf 3123.796
CRR073303Juvenile bud 178.446
CRR073304Juvenile bud 225.271
CRR073305Juvenile bud 363.622
CRR073306Third green 17.036
CRR073307Third green 27.317
CRR073308Third green 39.300
CRR073309Second white 14.995
CRR073310Second white 26.360
CRR073311Second white 36.517
CRR073312Silver flowering 13.659
CRR073313Silver flowering 22.360
CRR073314Silver flowering 32.068
CRR073315Gold flowering 177.969
CRR073316Gold flowering 269.010
CRR073317Gold flowering 357.139
CRR073318Tawny withering 137.979
CRR073319Tawny withering 224.986
CRR073320Tawny withering 351.731