Detail information of GWHGAAZE004658


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN78118.14.573E-141hypothetical protein VITISV_041543 [Vitis vinifera]
Swissprottr|Q9FUY2|LEUNG_ARATH3E-111Transcriptional corepressor LEUNIG
trEMBLtr|A5AP02|A5AP02_VITVI2E-141Putative uncharacterized protein {ECO:0000313|EMBL:CAN78118.1}
TAIR10AT4G32551.14E-93LisH dimerisation motif;WD40/YVTN repeat-like-containing domain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene120342818120345047-
GWHAAZE00000001mRNA120342818120345047-
GWHAAZE00000001exon120342818120342964-
GWHAAZE00000001exon120343093120343293-
GWHAAZE00000001exon120343418120343534-
GWHAAZE00000001exon120344200120344355-
GWHAAZE00000001exon120344446120344595-
GWHAAZE00000001exon120344696120344863-
GWHAAZE00000001exon120344988120345047-
GWHAAZE00000001CDS120344988120345047-
GWHAAZE00000001CDS120344696120344863-
GWHAAZE00000001CDS120344446120344595-
GWHAAZE00000001CDS120344200120344355-
GWHAAZE00000001CDS120343418120343534-
GWHAAZE00000001CDS120343093120343293-
GWHAAZE00000001CDS120342818120342964-
Transcript Sequence

Network for GWHGAAZE004658

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD4050810.00039
PF00400.33WD40861231.30E-07
PF00400.33WD402132470.0018
PF00400.33WD402973320.0035
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.099
SRR3591706second leaf0.263
SRR3591707mature leaf0.000
SRR3591708Shoot apex1.099
SRR3591709Stem4.930
SRR3591710White floral bud2.115
SRR3591711White flower1.671
SRR3591712Green floral bud3.342
SRR3591713Yellow flower0.100
SRP173429 SRR8316895Juvenile bud stage 7.969
SRR8316896Juvenile bud stage 12.776
SRR8316897Juvenile bud stage 4.715
SRR8316894Third green stage 4.124
SRR8316900Third green stage 6.234
SRR8316901Third green stage 7.119
SRR8316898Complete white stage 0.295
SRR8316899Complete white stage 5.273
SRR8316903Complete white stage 1.170
SRR8316902Silver flowering stage0.203
SRR8316904Silver flowering stage0.198
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.336
SRR8316907Gold flowering stage 0.225
SRR8316908Gold flowering stage 0.088
SRP132670SRR6706286Control2.158
SRR6706287Light intensity 50%2.982
SRR6706288Light intensity 20%3.893
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.546
CNS0095593Slightly white alabastrum(diploid) 27.855
CNS0095594Slightly white alabastrum(diploid) 311.762
CNS0095595Whole white alabastrum(diploid) 27.499
CNS0095596Whole white alabastrum(diploid) 310.108
CNS0095597Whole white alabastrum(diploid) 46.469
CNS0095598Silvery flower (diploied) 14.709
CNS0095599Silvery flower (diploied) 26.348
CNS0095600Silvery flower (diploied) 31.506
CNS0095601Golden flower (diploid) 18.796
CNS0095602Golden flower (diploid) 23.137
CNS0095603Golden flower (diploid) 32.847
CNS0095604Slightly white alabastrum(tetraploid) 111.647
CNS0095605Slightly white alabastrum(tetraploid) 211.106
CNS0095606Slightly white alabastrum(tetraploid) 37.177
CNS0095607Whole white alabastrum(tetraploid) 18.551
CNS0095608Whole white alabastrum(tetraploid) 25.603
CNS0095609Whole white alabastrum(tetraploid) 35.587
CNS0095610Silvery flower (tetraploid) 10.209
CNS0095611Silvery flower (tetraploid) 21.327
CNS0095612Silvery flower (tetraploid) 30.684
CNS0095613Golden flower (tetraploid) 10.039
CNS0095614Golden flower (tetraploid) 20.074
CNS0095615Golden flower (tetraploid) 30.251
CRA001975CRR073297Stem 112.100
CRR073298Stem 29.759
CRR073299Stem 36.681
CRR073300Leaf 19.584
CRR073301Leaf 28.623
CRR073302Leaf 36.869
CRR073303Juvenile bud 19.373
CRR073304Juvenile bud 24.268
CRR073305Juvenile bud 36.445
CRR073306Third green 10.154
CRR073307Third green 20.326
CRR073308Third green 30.253
CRR073309Second white 10.098
CRR073310Second white 20.019
CRR073311Second white 30.021
CRR073312Silver flowering 10.820
CRR073313Silver flowering 20.755
CRR073314Silver flowering 30.082
CRR073315Gold flowering 10.338
CRR073316Gold flowering 20.077
CRR073317Gold flowering 30.137
CRR073318Tawny withering 16.215
CRR073319Tawny withering 25.744
CRR073320Tawny withering 36.151