Detail information of GWHGAAZE004661


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002264089.20PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Vitis vinifera]
Swissprottr|P56820|EIF3D_ARATH0Eukaryotic translation initiation factor 3 subunit D {ECO:0000255|HAMAP-Rule:MF_03003}
trEMBLtr|F6HJU0|F6HJU0_VITVI0Eukaryotic translation initiation factor 3 subunit D {ECO:0000256|HAMAP-Rule:MF_03003}
TAIR10AT4G20980.40Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene120403355120405808-
GWHAAZE00000001mRNA120403355120405808-
GWHAAZE00000001exon120403355120404494-
GWHAAZE00000001exon120405248120405808-
GWHAAZE00000001CDS120405248120405808-
GWHAAZE00000001CDS120403355120404494-
Transcript Sequence

Network for GWHGAAZE004661

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05091.13eIF-3_zeta75175.80E-201
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03251EIF3D RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0005737cellular_componentcytoplasm
GO:0005852cellular_componenteukaryotic translation initiation factor 3 complex
GO:0003743molecular_functiontranslation initiation factor activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf98.727
SRR3591706second leaf68.765
SRR3591707mature leaf55.047
SRR3591708Shoot apex97.572
SRR3591709Stem59.121
SRR3591710White floral bud107.717
SRR3591711White flower129.999
SRR3591712Green floral bud150.889
SRR3591713Yellow flower94.903
SRP173429 SRR8316895Juvenile bud stage 70.191
SRR8316896Juvenile bud stage 95.898
SRR8316897Juvenile bud stage 43.534
SRR8316894Third green stage 40.688
SRR8316900Third green stage 129.465
SRR8316901Third green stage 124.924
SRR8316898Complete white stage 41.376
SRR8316899Complete white stage 119.594
SRR8316903Complete white stage 72.250
SRR8316902Silver flowering stage56.432
SRR8316904Silver flowering stage65.609
SRR8316905Silver flowering stage31.798
SRR8316906Gold flowering stage 97.714
SRR8316907Gold flowering stage 107.483
SRR8316908Gold flowering stage 108.367
SRP132670SRR6706286Control108.410
SRR6706287Light intensity 50%112.501
SRR6706288Light intensity 20%121.742
CNP0000432CNS0095592Slightly white alabastrum(diploid) 171.807
CNS0095593Slightly white alabastrum(diploid) 269.957
CNS0095594Slightly white alabastrum(diploid) 363.754
CNS0095595Whole white alabastrum(diploid) 261.300
CNS0095596Whole white alabastrum(diploid) 365.668
CNS0095597Whole white alabastrum(diploid) 449.853
CNS0095598Silvery flower (diploied) 148.176
CNS0095599Silvery flower (diploied) 245.009
CNS0095600Silvery flower (diploied) 3100.767
CNS0095601Golden flower (diploid) 134.375
CNS0095602Golden flower (diploid) 276.558
CNS0095603Golden flower (diploid) 377.000
CNS0095604Slightly white alabastrum(tetraploid) 188.184
CNS0095605Slightly white alabastrum(tetraploid) 267.310
CNS0095606Slightly white alabastrum(tetraploid) 3134.794
CNS0095607Whole white alabastrum(tetraploid) 146.952
CNS0095608Whole white alabastrum(tetraploid) 244.705
CNS0095609Whole white alabastrum(tetraploid) 3120.306
CNS0095610Silvery flower (tetraploid) 194.492
CNS0095611Silvery flower (tetraploid) 291.015
CNS0095612Silvery flower (tetraploid) 384.098
CNS0095613Golden flower (tetraploid) 143.603
CNS0095614Golden flower (tetraploid) 274.808
CNS0095615Golden flower (tetraploid) 386.794
CRA001975CRR073297Stem 1121.470
CRR073298Stem 2108.032
CRR073299Stem 3130.119
CRR073300Leaf 1124.699
CRR073301Leaf 2122.904
CRR073302Leaf 3139.145
CRR073303Juvenile bud 1146.374
CRR073304Juvenile bud 2128.429
CRR073305Juvenile bud 3165.018
CRR073306Third green 1103.155
CRR073307Third green 276.287
CRR073308Third green 395.693
CRR073309Second white 1103.092
CRR073310Second white 284.843
CRR073311Second white 392.392
CRR073312Silver flowering 1107.373
CRR073313Silver flowering 2135.478
CRR073314Silver flowering 3113.515
CRR073315Gold flowering 158.931
CRR073316Gold flowering 278.139
CRR073317Gold flowering 369.540
CRR073318Tawny withering 1103.333
CRR073319Tawny withering 279.046
CRR073320Tawny withering 3112.183